Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt27a06
(680 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118941-1|AAM50801.1| 399|Drosophila melanogaster LD27255p pro... 161 1e-39
AE014296-2300|AAF49802.2| 399|Drosophila melanogaster CG10711-P... 161 1e-39
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA... 33 0.27
BT003457-1|AAO39460.1| 985|Drosophila melanogaster RH34107p pro... 32 0.83
AE014297-1126|AAF54512.1| 985|Drosophila melanogaster CG3999-PA... 32 0.83
BT011108-1|AAR82775.1| 395|Drosophila melanogaster LD44162p pro... 29 7.8
AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid horm... 29 7.8
AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA... 29 7.8
>AY118941-1|AAM50801.1| 399|Drosophila melanogaster LD27255p
protein.
Length = 399
Score = 161 bits (390), Expect = 1e-39
Identities = 86/198 (43%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
M+RF Y+EARL E+++ RD VKIYDGD KT F DGEV+LTTHRL WG+PG+I + V
Sbjct: 1 MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFWGRPGEIARAAV 60
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
L L L YV + EE+ G RIIMHL P K PGP S ++KLS K+G+
Sbjct: 61 TLCLPLSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKGPGPLDTSRATHIKLSGKNGL 120
Query: 438 DTAFYKALSDAVAAKAWE-RQTPIDXXXXXXXXXXXXXXXXXXXNSKIRSGIVGIERSIE 614
F+ AL + + A+ WE T + R+GI GIER +E
Sbjct: 121 SVEFHSALRETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLE 180
Query: 615 EQHRATDQSISVAFQDLT 668
+ +ATD++I++AFQDL+
Sbjct: 181 AKAKATDENIALAFQDLS 198
>AE014296-2300|AAF49802.2| 399|Drosophila melanogaster CG10711-PA
protein.
Length = 399
Score = 161 bits (390), Expect = 1e-39
Identities = 86/198 (43%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
Frame = +3
Query: 78 MDRFEYIEARLFDGENYLKRDKNVKIYDGDDKTQFIDGEVLLTTHRLLWGKPGDIPKGLV 257
M+RF Y+EARL E+++ RD VKIYDGD KT F DGEV+LTTHRL WG+PG+I + V
Sbjct: 1 MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFWGRPGEIARAAV 60
Query: 258 CLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFHYVKLSFKDGV 437
L L L YV + EE+ G RIIMHL P K PGP S ++KLS K+G+
Sbjct: 61 TLCLPLSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKGPGPLDTSRATHIKLSGKNGL 120
Query: 438 DTAFYKALSDAVAAKAWE-RQTPIDXXXXXXXXXXXXXXXXXXXNSKIRSGIVGIERSIE 614
F+ AL + + A+ WE T + R+GI GIER +E
Sbjct: 121 SVEFHSALRETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLE 180
Query: 615 EQHRATDQSISVAFQDLT 668
+ +ATD++I++AFQDL+
Sbjct: 181 AKAKATDENIALAFQDLS 198
>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
protein.
Length = 2284
Score = 33.5 bits (73), Expect = 0.27
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 397 LTTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQN 284
+TT P +PGS P+C + PP T P+++SK N
Sbjct: 1092 VTTPKPRCYPGSPNPECQKATYSPPTTRT-PVTTSKPN 1128
Score = 33.5 bits (73), Expect = 0.27
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 397 LTTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQN 284
+TT P +PGS P+C + PP T P+++SK N
Sbjct: 1628 ITTLKPRCYPGSKDPECQPATYAPPTTRT-PVTTSKPN 1664
Score = 33.5 bits (73), Expect = 0.27
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 394 TTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQ 287
TT P FPGS+ P+C+ G P P P + ++++
Sbjct: 1839 TTLAPKCFPGSSDPECLNCYPGSPDPRCPKVPTTRK 1874
Score = 33.1 bits (72), Expect = 0.36
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 394 TTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQ 287
TT P +PGS+ P+C+ G P P P + ++K+
Sbjct: 1507 TTLQPKCYPGSSDPECLNCYPGSPDPRCPKIPTTKK 1542
Score = 31.9 bits (69), Expect = 0.83
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 394 TTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQNT*YRWRD 263
T+ P +PGS+ P+C+ G P P P + ++K+ Y D
Sbjct: 598 TSPQPKCYPGSSDPECLNCYPGSPDPRCPKVPTTKKAGCYEGSD 641
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 394 TTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQN 284
TT P PGS+ P+C+ G P P P + ++K++
Sbjct: 1144 TTLKPKCSPGSSDPECLNCYPGSPDPRCPKVPTTKKS 1180
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 382 PGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQN 284
P +PGS+ P+C + PP PP+++SK N
Sbjct: 1460 PRCYPGSSDPECQPETYSPP-TTRPPVTTSKPN 1491
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 397 LTTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSK 290
+TT PG +PGS P+C + P P +++ +
Sbjct: 460 ITTVKPGCYPGSDDPECQPATYVPQTTRRPSITTKR 495
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 394 TTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSK 290
TT G F GS P+C + PP PP ++ K
Sbjct: 1176 TTKKSGCFDGSQDPRCQPATYLPPSSRRPPTTAPK 1210
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 391 TAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQN 284
T +PGS+ PKC + PP PL++S+ N
Sbjct: 2085 TTASRCYPGSSDPKCQPATYAPPSTRA-PLTTSRPN 2119
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 397 LTTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSSKQ 287
+TT+ P +PGS+ P+C PP +++S+Q
Sbjct: 734 VTTSRPRCYPGSSDPECQPATLVPPTTVRTTITTSRQ 770
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 397 LTTAGPGLFPGSAGPKCIIILFGPPRPNTPPLSSS 293
+TT P + GS P+C+ + PP P +SS
Sbjct: 1948 VTTLRPKCYSGSNDPECLPSTYSPPTTRIPVTTSS 1982
>BT003457-1|AAO39460.1| 985|Drosophila melanogaster RH34107p
protein.
Length = 985
Score = 31.9 bits (69), Expect = 0.83
Identities = 25/66 (37%), Positives = 32/66 (48%)
Frame = +3
Query: 228 KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFH 407
+PGD + L+LH FC+ GG G+G P + HL P LPG VVSP
Sbjct: 715 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GMG-PIGVKAHLAPYLPGH----PVVSPLS 766
Query: 408 YVKLSF 425
+ SF
Sbjct: 767 SEEHSF 772
>AE014297-1126|AAF54512.1| 985|Drosophila melanogaster CG3999-PA
protein.
Length = 985
Score = 31.9 bits (69), Expect = 0.83
Identities = 25/66 (37%), Positives = 32/66 (48%)
Frame = +3
Query: 228 KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPGKRPGPAVVSPFH 407
+PGD + L+LH FC+ GG G+G P + HL P LPG VVSP
Sbjct: 715 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GMG-PIGVKAHLAPYLPGH----PVVSPLS 766
Query: 408 YVKLSF 425
+ SF
Sbjct: 767 SEEHSF 772
>BT011108-1|AAR82775.1| 395|Drosophila melanogaster LD44162p
protein.
Length = 395
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -2
Query: 400 GLTTAGPGLFPGSAGPKCIIILFG-----PPRPNTPPLSSS 293
G T++GP GS+G ++ F PP P PPL+SS
Sbjct: 232 GNTSSGPSASSGSSGATGLVRSFASVGAPPPPPPIPPLASS 272
>AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid hormone
receptor-associatedprotein TRAP220 protein.
Length = 1475
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -2
Query: 400 GLTTAGPGLFPGSAGPKCIIILFG-----PPRPNTPPLSSS 293
G T++GP GS+G ++ F PP P PPL+SS
Sbjct: 917 GNTSSGPSASSGSSGATGLVRSFASVGAPPPPPPIPPLASS 957
>AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -2
Query: 400 GLTTAGPGLFPGSAGPKCIIILFG-----PPRPNTPPLSSS 293
G T++GP GS+G ++ F PP P PPL+SS
Sbjct: 917 GNTSSGPSASSGSSGATGLVRSFASVGAPPPPPPIPPLASS 957
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,164,110
Number of Sequences: 53049
Number of extensions: 658258
Number of successful extensions: 1638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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