Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt27a06
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     26   0.38 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 513 ECQLEFVFPKLWQQQRHLKLCKKQYLLHL 427
           E  LEF   K W++  +L+    +YL+HL
Sbjct: 83  EVDLEFYLGKEWKKNLNLRDSVTKYLIHL 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 494 TNSN*HSENSYKPNNGLKTHSHSCK 568
           +N   H+ N+YK N     ++++CK
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 494 TNSN*HSENSYKPNNGLKTHSHSCK 568
           +N   H+ N+YK N     ++++CK
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 494 TNSN*HSENSYKPNNGLKTHSHSCK 568
           +N   H+ N+YK N     ++++CK
Sbjct: 86  SNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 494 TNSN*HSENSYKPNNGLKTHSHSCK 568
           +N   H+ N+YK N     ++++CK
Sbjct: 86  SNRTIHNNNNYKYNYNNNNYNNNCK 110


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 249 LLVYLLVFPIEVYVLL 202
           LLV +LV P  VYVL+
Sbjct: 233 LLVAVLVMPFAVYVLV 248


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 232 GFPHRSLCVVNRTSPSMNWVLS 167
           GF + S+C    TSP    VL+
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLA 648


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 141  KNVKIYDGDDKTQFIDG 191
            K VK+  G DK +F+ G
Sbjct: 1506 KEVKVLLGSDKIKFVPG 1522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,116
Number of Sequences: 438
Number of extensions: 4553
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)