Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p22
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...   233   1e-62
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    37   0.003
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.0  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   5.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   7.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.0  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   7.0  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   7.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.2  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   9.2  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =  233 bits (571), Expect = 1e-62
 Identities = 108/199 (54%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
 Frame = +1

Query: 43  NDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERNEKLYGRGSTDDKGPVLGWLHTIN 219
           NDP K TV IY H DVQPA   DGW T+PF L V+   +++GRG+TDDKGP++GW+  I 
Sbjct: 85  NDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNKGRMFGRGATDDKGPLIGWISAIE 144

Query: 220 AYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLKPEGFFDSVDYVCISDNYWLGTTK 399
           A+K  G + PVNL   FE MEE GSEGL+ L+  + + E +F   D VCISD YWLGT K
Sbjct: 145 AHKELGIDFPVNLLMCFEGMEEYGSEGLEDLI--RAEAEKYFAKADCVCISDTYWLGTKK 202

Query: 400 PCITYGLRGISYYFLEVECAKMDLHSGVYGGTVHEAMSDLIYLMNTLVDKDGKILVTDIY 579
           P +TYGLRG+ Y+ + VE    DLHSGV+GGTVHE M+DL+ +M+TLV  +G+IL+  I 
Sbjct: 203 PVLTYGLRGVCYFNITVEGPSADLHSGVFGGTVHEPMTDLVAIMSTLVKPNGEILIPGIM 262

Query: 580 KSVAPLTETETKLYTTIDF 636
             VA LT TE  +Y  ID+
Sbjct: 263 DQVAELTPTEDSIYDGIDY 281


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 70  IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 216
           + GH DV P  ++  D W   PF     N  +Y RG+ DDK  V+  L  +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 97  QVVHPNDHRYKLYFFLDHYPIR 32
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 187 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 288
           GP L ++  TIN Y+GTG  L  +LK + +  E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 86  MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 181
           +YN + N    RLN      A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 154 FHCAQLVQKVQSPIHQISMQVVHPNDHR 71
           FH +  +  +   IH+I +Q VH  DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 167 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 51
           L Y   L ST+ + S+S  S FN   + +   I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 159
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 449  WNVQKWIFTVESMVAQFMKPCLI*ST-**IHSWTKMGRYW*L-TYINR*LHSLKP 607
            W +QKW     S+  +  K CL+      +H++   G Y  L  YIN+ L  + P
Sbjct: 1904 WRMQKWDIPPLSLDNKTTKDCLVFEVLHAVHNYAIYGNYLHLEEYINKKLLLINP 1958


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 123  SLPSIRFQCRLYIQMTIDTNCIFFW 49
            SLPS+R  C+LY  ++I +   F W
Sbjct: 4083 SLPSVRLACQLY-GVSIQSLVFFTW 4106


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 472 HSGVYGGTVHEAMSDLIYLMNTLV 543
           H  VY GTVH   SDL  L+  +V
Sbjct: 359 HVFVYDGTVHANQSDLPILLPRMV 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,049
Number of Sequences: 5004
Number of extensions: 58296
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)