Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p14
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     31   0.15 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    28   1.4  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    27   3.3  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    27   3.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.3  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   7.7  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   7.7  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 54  LCNTMAVKDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKLIKDNTTVE 218
           L N + +  L  C +E  S  SHE  P  S+  ++++    K   + + ++TTV+
Sbjct: 556 LANEVDIDALSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQETMDESTTVD 610


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +3

Query: 243 PSVLASLAV---QNLSLDKACRVNL-NYSDEVCTALTLRQTENYTEAEENVQRLIASVQV 410
           P +L  L +   Q++  +    +NL   ++E+C +L    + ++     +V+R+ A +++
Sbjct: 429 PVILPDLEIPGSQSIVENMRAVINLAKLTNEICDSLYWNPSPSFESQVNSVRRIYARLEL 488

Query: 411 WKNVVQTAI 437
           WK+ + +++
Sbjct: 489 WKSDLHSSV 497


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 156 EIKKLTFKQRLKLIKDNTTVEPIMA-CYVMP-SVLASLAVQNLSLDKACRVNLNYSDEVC 329
           EI   T +  L   + N  +EPI + C ++  S L    V    L+      +NY+D+  
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203

Query: 330 TALTLRQTENYTEAEENVQRLIA 398
            AL +    +  +A  N+Q  +A
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVA 226


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 510 PIVGEFLSCLGFIVNTYFFYELPVEVTAFTESIFPAI 620
           PI+G F+ CLGF      FY L +        I P I
Sbjct: 82  PIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYI 118


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 452 YHTYWYSRLHNVFPNLDTRYQSLYVFFRLRVV 357
           +  YW+ ++H + P  D  Y+   V   L ++
Sbjct: 593 WQEYWHCKIHKLLPKEDASYEQKVVLLTLSLL 624


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 162 LFRERFLISTGMFREILSSTLHRHKLSGL 76
           +F  RF ++T   R I  +  H H LSGL
Sbjct: 138 IFVHRFSLATMPLRNIFKNCAHYHLLSGL 166


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 33  YRPQKYL--LCNTMAVKDLKVCDDE 101
           Y PQ  +  LCNT+  ++L V DDE
Sbjct: 137 YSPQSKIVVLCNTLNFEELDVYDDE 161


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -1

Query: 538 KQDKNSPTIGSKMHAFLLPVLSLHAPTNNITHTGIAVCTTFFQTWTLAISLCTFSSASV 362
           ++ K+ P +  K++AF L     +  +  + H  I          T  + LC F SA V
Sbjct: 117 RRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILKLCDFGSAKV 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,088
Number of Sequences: 5004
Number of extensions: 62732
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)