Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26p14
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 33 0.21
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 32 0.48
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 30 1.5
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 30 1.5
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454 29 2.6
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 29 3.4
12_02_0674 - 21745321-21746223,21746229-21747608 29 4.5
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 29 4.5
04_01_0618 - 8094991-8097288 29 4.5
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591... 28 6.0
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 28 7.9
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 28 7.9
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 279 SLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVIL 455
S D+AC + DE + L E+Y ++ +Q L ++ +W + + A+P+ V+L
Sbjct: 412 SPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEALPIYVVL 470
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 31.9 bits (69), Expect = 0.48
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 225 MACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTL-RQTENYTEAEENVQRLIAS 401
+A +VM S L LA++ L ++ N N+ +E + Q N +E E V R I+
Sbjct: 1047 VAIFVMDS-LRQLAMKFLEREELA--NYNFQNEFLRPFAVVMQKSNASEVRELVVRCISQ 1103
Query: 402 VQVWK-NVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVNTYFFYELP 578
+ + + N +++ +F A +D RK+ +LL + IV YF Y
Sbjct: 1104 MVLSRVNNIKSGWKSVFTVFTAAAADD---RKSIVLLAF-----ETMEKIVRDYFPYITE 1155
Query: 579 VEVTAFTESIFPAIT 623
E T FT+ + IT
Sbjct: 1156 TETTTFTDCVKCLIT 1170
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 306 LNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTG 485
L+ S L+L Q T N + +Q+W N + + V + G WS T
Sbjct: 581 LSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAASCVSVAGLFISGEWSSLTA 640
Query: 486 K 488
+
Sbjct: 641 E 641
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 201 DNTTVEPIMACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEEN 380
D T +PI + + + N S DKAC++ N DE L ENY ++
Sbjct: 153 DLTPTDPIRLGLALNISVFYCEIMN-SPDKACQLAKNAFDEAVAELPSLSEENYKDSTLI 211
Query: 381 VQRLIASVQVWKN 419
+Q L ++ +W +
Sbjct: 212 MQLLRDNLALWNS 224
>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
Length = 249
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 402 HSLSVFVRFLPPPCSFPFVVMLKPC-RP 322
H+ S+FV LP PC P V L C RP
Sbjct: 123 HTPSIFVADLPLPCGLPVAVALDMCLRP 150
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 78 DLKVCDDEECSKGSHETCPLKSEN 149
D++VCD + C KG H C K E+
Sbjct: 25 DIRVCDFKNCLKGYHPHCVGKEES 48
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 353 GKLHGGGRKRTKTDSECPSLEKRCANGYTSMCDII 457
G GGGR KT EC L KR + T+ C +
Sbjct: 371 GNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSAL 405
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 81 LKVCDDEECSKGSHETCPLKSENVREIKKLTFK 179
L+VC + C HETC L+ E + +LT K
Sbjct: 186 LEVCLEFACKSLEHETCTLEKEAYPALDELTSK 218
>04_01_0618 - 8094991-8097288
Length = 765
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 411 WKNVVQTAIPVCVILFVG--AWSDKTGKRKACILLPIVGEFLSC 536
W+ VV V V ++V AWS K KA +LL IVG C
Sbjct: 110 WRQVVTLVSQVTVAMYVFCLAWSGKKILLKAAVLLFIVGILKFC 153
>01_01_0764 +
5910687-5910961,5912549-5912636,5912750-5912909,
5913017-5913237,5913315-5913610,5914176-5914287,
5914376-5914514,5914850-5915046,5915134-5915223,
5915611-5915646
Length = 537
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 375 ENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIV----GEFLSCLG 542
E+ R+ SV+++ ++ T +++ A S K GKR AC +L ++ G F +
Sbjct: 119 EHKVRVFYSVRIFLGLISTITETVLVV---ALSRKYGKRLACYVLAMLCLTSGCFFASTS 175
Query: 543 FIVNTYFFYELPVEVTAF 596
F+ +++ Y + + F
Sbjct: 176 FLPSSFSMYAVTLSSALF 193
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 622 VIAGKIDSVNAVTSTGNS*KKYVFTMKPKQDKNSPTIGSK 503
++ G D V VTS GN + Y K Q K + IG K
Sbjct: 207 IVVGLFDYVEGVTSEGNKVRVYTQVGKSSQGKFALDIGVK 246
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 234 YVMPSV--LASLAVQNLSLDKACRVNLNYSDEVCTAL 338
Y +P+ +A LAVQ LS+D CR + D+V TAL
Sbjct: 330 YSLPAAQKIAGLAVQCLSMDARCRPGM---DQVVTAL 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,146,028
Number of Sequences: 37544
Number of extensions: 385114
Number of successful extensions: 936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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