Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26p14
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051) 69 3e-12
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 61 9e-10
SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6) 53 2e-07
SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025) 43 3e-04
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_35965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 28 6.1
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 28 6.1
>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
Length = 446
Score = 69.3 bits (162), Expect = 3e-12
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Frame = +3
Query: 210 TVEPIMACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQR 389
TVEP++ Y+ + ++S +Q L+ K C+ + N S C L+ +Y + VQ
Sbjct: 11 TVEPVLFLYMFCTFMSSPLLQQLAYRKICKEHYNTS--ACNNLS-----DYQNEQNYVQT 63
Query: 390 LIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVNTYFFY 569
++ ++ + + L +GAWSD+ G RKA ++LP VG L + +++N +FF
Sbjct: 64 STSNWMRYQALALALPSIASSLVLGAWSDRVG-RKAIMILPPVGNILMNINYMLNVHFF- 121
Query: 570 ELPVEVTAFTESIFPAIT-GGWFTNFIGAFSYVGDIT 677
+ V I A T GG+ T + FSY+ DIT
Sbjct: 122 --SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADIT 156
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 60.9 bits (141), Expect = 9e-10
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Frame = +3
Query: 210 TVEPIMACYVMPSVLASLAVQN-----LSLDKACRVNLNYSDE--VCTALTLRQTENYT- 365
TVEP++ CY +L +Q LS K N +D C + + + T
Sbjct: 40 TVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEETL 99
Query: 366 EAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGF 545
E ++ VQ + +Q+ + + + V L +GAWSD+ G+R+A + +PI G +
Sbjct: 100 ELQKEVQAEASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRRA-MAMPIFGSAVESAII 158
Query: 546 IVNTYFFYELPVEVTAFTESIFPAITGGWFTNFIGAFSYVGDIT 677
+V YF ELPV E I G + T + FSY+ DIT
Sbjct: 159 LVIMYF--ELPVTFLLLAEFI-NGSCGFFPTMVLSVFSYIADIT 199
>SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)
Length = 177
Score = 52.8 bits (121), Expect = 2e-07
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +3
Query: 210 TVEPIMACYVMPSVLASLAVQNLSLDK-ACRVNLNYSDEVCTALTLRQTENYT--EAEEN 380
T+EP++ YV ++ +Q K A + Y T N T E+
Sbjct: 13 TIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFYDPSSHTGCGNETRYNSTLHNLEQE 72
Query: 381 VQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVNTY 560
VQ A VQ+ + ++ + + L VG+WSD G RK ILLP++G L + ++ Y
Sbjct: 73 VQATAAYVQIGITMFESLPSIVLSLMVGSWSDCHG-RKPAILLPVIGSMLEAVCVLIVMY 131
Query: 561 FFYELPVEVTAFTESIFPAITGGWFTNFIGAFSYVGDIT 677
+L V V F ++ +G T +G +Y+ D T
Sbjct: 132 --CDLDVYV-LFIGALLNGCSGYLPTLLMGIMAYIADST 167
>SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)
Length = 930
Score = 42.7 bits (96), Expect = 3e-04
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 6/161 (3%)
Frame = +3
Query: 213 VEPIMACYVMPSVLASLAV-----QNLSLDKACRV-NLNYSDEVCTALTLRQTENYTEAE 374
VEP++ Y L LAV S DK NL S E C + E E
Sbjct: 10 VEPVVFFYSYWYFLGLLAVLQFVYHRFSEDKGFPYRNLTESGEGCGGGGFSPNSSLHELE 69
Query: 375 ENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVN 554
VQ + + ++ V ++ F G+++D+ G RK ++ P+VG L L +
Sbjct: 70 MEVQSASSELYMYYLGVWALSISFIVPFTGSYTDRRG-RKPGLIAPLVGAILETLVLFLV 128
Query: 555 TYFFYELPVEVTAFTESIFPAITGGWFTNFIGAFSYVGDIT 677
YF ELPV V + +TG T + YV D T
Sbjct: 129 LYF--ELPVYV-LIAGGLVNGLTGNEATMTMATTCYVTDTT 166
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 60 NTMAVKDLKVCDDEECSKGSHETCPLKSENVREIKKLT 173
N VKD + D+ CSKGS ET L + + KLT
Sbjct: 657 NNECVKDNQCNTDKCCSKGSSETPMLSPLEINSVPKLT 694
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Frame = +3
Query: 210 TVEPIMACYVMPSVLASLAVQNLSLDKACR---VNLNYSDEVCTALTLRQTENYTEAEEN 380
TVE + Y+ +L +Q ++A + +N + +C+ L T A +
Sbjct: 19 TVEITIFFYIAGMILELPVLQQYLYERAAKELKINNTSNTTICSPNDLNSTGQ--SANDA 76
Query: 381 VQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRKACILLPIVGEFLSCLGFIVNTY 560
VQ + + N+ V +G WSDK G RK +L+ G + + Y
Sbjct: 77 VQEKASQYILAYNLALQLPAVLTACLLGTWSDKNG-RKPLMLIVAFGAIVDASVALFTVY 135
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +3
Query: 318 DEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTGKRK 494
DE C + TLR+ +N +E ENV+ + ++ ++ + P+C+I GA+ + T R+
Sbjct: 41 DECCNS-TLRRDKNISEFIENVKPVATKIKQFRLHREDFEPICLI-GKGAFGEVTVVRQ 97
>SB_35965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 251 NTRHHVASHYRLHGCVIFY*FQSLFECKLFYFANV 147
N R +V +H R + C+IF F +LF ++Y A +
Sbjct: 125 NRRRYVPTHVRNNNCLIF--FATLFPLPVYYTAAI 157
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 374 RKRTKTDSECPSLEKRCANGYTSMC 448
R + DS+CP +K C++G T +C
Sbjct: 1572 RPKCLLDSDCPGNQKCCSDGCTMIC 1596
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 28.3 bits (60), Expect = 6.1
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Frame = +3
Query: 75 KDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKLIKDNTTVEPIMACYVMPSVL 254
+DL+ E K E + SE + K+L K++ K +++ E + L
Sbjct: 218 EDLERSLKELLEKSPKEKEEMLSEELETQKELLIKEKHK-VEEKLQNELNQKLELKDKEL 276
Query: 255 AS-LAVQNLSLDKACRVNLNYSDEVCTALTLRQ--TENYTEAEENVQRLIASVQVWKNVV 425
L Q L+K E+ L++ + TE + EEN +RL+ SVQ ++++
Sbjct: 277 EEKLLAQKADLEKVIAEKEAQQKELQQELSIHKSATEKLKDLEENEKRLVTSVQELQSLM 336
Query: 426 Q 428
+
Sbjct: 337 E 337
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 365 GGGRKRTKTDSECPSLEKRCANGYTS 442
GGG K TKT +C + + R NG T+
Sbjct: 598 GGGAKTTKTTKKCSTRKSRGQNGDTT 623
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,427,173
Number of Sequences: 59808
Number of extensions: 461024
Number of successful extensions: 1694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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