Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p14
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.2  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 622 VIAGKIDSVNAVTSTGNS*KKYVFTM 545
           +IAGKI S+N +T+T      Y+ T+
Sbjct: 294 LIAGKIMSINNLTATAQMLGLYMVTV 319


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 452  YHTYWYSRLHNVFPNLDTRYQSLYVFFRLR 363
            +  +W+ RL  +    D  Y  +++FF  R
Sbjct: 980  FRGFWHHRLAEIKRRPDLEYGKVWLFFGCR 1009


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 531 IKIHQLSAAKCTLFFYQSCRSTP 463
           +K H++  + C+ +F +  +STP
Sbjct: 43  LKAHRVVLSACSPYFRELLKSTP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,869
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)