Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p10
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 216 EFSRRKIISHYIYT*FKLKTALDQYDCSH 130
           E  +R    H++ T  +L T    Y CSH
Sbjct: 14  ECHKRFTRDHHLKTHMRLHTGEKPYHCSH 42


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 563 LFINLVELLSSYYDIIKRHLCINSLITIIRLLFASNPNR 447
           LFI+L+ L    Y+II      N  + +I  +F++N ++
Sbjct: 8   LFISLIILNDEIYNIIASPQLNNPTLFMIGGVFSNNKSK 46


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 587 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 465
           NLV  +     + V L+ SY++ I   +  + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 587 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 465
           NLV  +     + V L+ SY++ I   +  + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 587 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 465
           NLV  +     + V L+ SY++ I   +  + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,957
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)