Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p08
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    29   2.1  
Z81065-4|CAI79162.1|  176|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81038-18|CAI79154.1|  176|Caenorhabditis elegans Hypothetical p...    28   4.8  
AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = -3

Query: 433  KIRKKKTPHTTFKKQSLSNIKQNII*SNH*KVQKVTRVLCESENKSLALSNVKNNVIRQT 254
            K  +KK  HT   K   S+ K+N    +  KV +VT    E   +      VK NV++QT
Sbjct: 874  KSSEKKVEHTADGKSVESSQKKNSQ-KDDVKVSQVTTKKEEDSTQPAPTLTVKKNVVKQT 932

Query: 253  IRRRSKNKRLK 221
              + +  K  K
Sbjct: 933  AEKSTSEKEHK 943


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 140 INVSKYINESRYNDVLFKN-NVIRQTIRRRSKNKRL 36
           I+++KYI+ ++YND++  + N +  T+   + NK +
Sbjct: 426 IDINKYIDINKYNDIIITHENTVNPTVEFNTINKEI 461



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 234 INVSKYIKESRYNDVLFKN-NVIRQTIRTRSKNKRL 130
           I+++KYI  ++YND++  + N +  T+   + NK +
Sbjct: 426 IDINKYIDINKYNDIIITHENTVNPTVEFNTINKEI 461


>Z81065-4|CAI79162.1|  176|Caenorhabditis elegans Hypothetical
           protein F16C3.4 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 416 FFFSYF--LFVCCILFKRXRQTVASRFE*KSRT*K 514
           F FS+F  LFV  +LF   +  + SR++ KSR+ K
Sbjct: 5   FIFSFFIALFVSSLLFLCGKSRITSRYDKKSRSKK 39


>Z81038-18|CAI79154.1|  176|Caenorhabditis elegans Hypothetical
           protein F16C3.4 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 416 FFFSYF--LFVCCILFKRXRQTVASRFE*KSRT*K 514
           F FS+F  LFV  +LF   +  + SR++ KSR+ K
Sbjct: 5   FIFSFFIALFVSSLLFLCGKSRITSRYDKKSRSKK 39


>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 248 SYSLTNNVIFNVRQCQRLIFRFTQNSCYFLYFLMIRLDYILFYI 379
           SYS+T   I         +F  TQ +C F YF+ I   Y+L  I
Sbjct: 257 SYSMTAAGIIMCLYSNPTVFAITQAACRF-YFIAIHFCYVLAMI 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,688,832
Number of Sequences: 27780
Number of extensions: 154425
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)