Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26p08
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.7  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 137 NVSKYINESRYNDVLFKN-NVIRQ 69
           N+S Y N++ YN  L+ N N I Q
Sbjct: 92  NISNYNNDNNYNKKLYYNINYIEQ 115



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 231 NVSKYIKESRYNDVLFKN-NVIRQ 163
           N+S Y  ++ YN  L+ N N I Q
Sbjct: 92  NISNYNNDNNYNKKLYYNINYIEQ 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 246 EEVKINVSKYIKESRYN 196
           EE+K  VS YIK+  YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  EEVKINVSKYINESRYN 8
           EE+K  VS YI +  YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 246 EEVKINVSKYIKESRYN 196
           EE+K  VS YIK+  YN
Sbjct: 95  EEIKKEVSSYIKKIGYN 111



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  EEVKINVSKYINESRYN 8
           EE+K  VS YI +  YN
Sbjct: 95  EEIKKEVSSYIKKIGYN 111


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 246 EEVKINVSKYIKESRYN 196
           EE+K  VS YIK+  YN
Sbjct: 111 EEIKKEVSSYIKKIGYN 127



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  EEVKINVSKYINESRYN 8
           EE+K  VS YI +  YN
Sbjct: 111 EEIKKEVSSYIKKIGYN 127


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 246 EEVKINVSKYIKESRYN 196
           EE+K  VS YIK+  YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 58  EEVKINVSKYINESRYN 8
           EE+K  VS YI +  YN
Sbjct: 168 EEIKKEVSSYIKKIGYN 184


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 137 NVSKYINESRYNDVLFKN-NVIRQ 69
           N+S Y N + YN  L+ N N I Q
Sbjct: 92  NISNYNNNNNYNKKLYYNINYIEQ 115


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 137 NVSKYINESRYNDVLFKN-NVIRQ 69
           N+S Y N + YN  L+ N N I Q
Sbjct: 330 NISNYNNNNNYNKKLYYNINYIEQ 353


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 313 ESENKSLALSNVKNNVIRQTIRRRSKNKRLKIY 215
           E E  SL ++  KNN I    +  +K    KIY
Sbjct: 499 EEEAVSLLINFSKNNTIVDISKLVNKRNNAKIY 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,213
Number of Sequences: 438
Number of extensions: 2232
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)