Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26p04
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 92 1e-20
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 90 3e-20
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 0.80
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 0.80
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 1.1
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 1.4
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 2.4
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 23 4.3
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 23 4.3
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 23 4.3
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 4.3
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 23 5.6
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 23 7.4
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 23 7.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 23 7.4
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 22 9.8
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 91.9 bits (218), Expect = 1e-20
Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Frame = +1
Query: 1 GASLRKMVKKMEVTXHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAA 174
GASLR+ V+K+EV H++Y C FCG++ +KR+ GIW C K CK+ +AGGAW +T AA
Sbjct: 19 GASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAA 78
Query: 175 SSCRSAVXRLREV 213
+S RS + RLRE+
Sbjct: 79 TSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 90.2 bits (214), Expect = 3e-20
Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = +1
Query: 1 GASLRKMVKKMEVTXHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRTVAGGAWVFSTTAA 174
GASLR+ V+K+EV H++Y C FCG+ +KR+ GIW C K C +T+AGGAW +T AA
Sbjct: 19 GASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAA 78
Query: 175 SSCRSAVXRLREV 213
+S RS + RLRE+
Sbjct: 79 TSARSTIRRLREM 91
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 0.80
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 46 HAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 132
H K T C C + +K C +W C+ CK+
Sbjct: 16 HRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 0.80
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 52 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 141
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 1.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 78 GCYETFLCRHLVL*AMQEDCSRRSLGILH 164
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 134 VLLHRLQDQMPTQERFIASLPQNEQV 57
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 92 RFIASLPQNEQVYFA 48
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 209 SRNLXTADLHDEAAVVEN 156
SRNL T + +DE ++++N
Sbjct: 603 SRNLSTVNPYDEGSIIKN 620
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 4.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1
Query: 106 IWSCKRCKRT 135
IW+CK C++T
Sbjct: 65 IWTCKNCRKT 74
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 95 ERFIASLPQNEQVYFA 48
ERF ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 104 PTQERFIASLPQNEQVYFACXVTSIFLTI 18
P Q +F+ +NE +Y A TSIF ++
Sbjct: 253 PCQLKFLKLKFENEILYTAMHTTSIFKSV 281
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 140 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACXVTS 33
+T +L ++ Q+ T F+A + +NE +FA TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 94 SCVGIWSCKRCKRTV 138
+C GIW CK ++ V
Sbjct: 231 ACDGIWDCKSSQQVV 245
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = -2
Query: 242 FFYVYYLNXFTSRNLXTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERF 87
F ++ + +S N + +H+E EN + T ++R+ +Q P + +
Sbjct: 21 FIIIFIIRDMSSSN---SRVHEEQPPTENRRYARPTAQMNRVIEQQPRRRDY 69
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 22.6 bits (46), Expect = 7.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 176 EAAVVENTQAPPATVLLHRLQDQM-PTQERFIASL 75
+ ++ E Q+PP LHR D + P F ASL
Sbjct: 81 DPSLSERKQSPPGK-SLHRFVDNLNPNSSHFSASL 114
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 22.2 bits (45), Expect = 9.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 94 SCVGIWSCKRCKRTV 138
+C GIW CK ++ +
Sbjct: 228 ACDGIWDCKTSQQVI 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,642
Number of Sequences: 5004
Number of extensions: 13456
Number of successful extensions: 43
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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