Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26o24
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 217 8e-58
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 44 2e-05
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 33 0.024
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 30 0.29
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 0.90
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 1.2
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 2.7
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 27 2.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.6
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 26 4.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 6.3
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 25 8.4
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 8.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.4
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 8.4
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.4
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 8.4
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 217 bits (531), Expect = 8e-58
Identities = 112/196 (57%), Positives = 145/196 (73%)
Frame = +2
Query: 5 VGQELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDL 184
VG L + +L + F L+KD+E EVR A A ++ FC LDK I++ I+P I++L
Sbjct: 276 VGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDK----RIVLEEIIPVIQEL 331
Query: 185 VCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNE 364
+ D QHV++AL I L+P +G++ T E+LLP+FL LKDE PEVRLNIIS LE VN+
Sbjct: 332 INDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNK 391
Query: 365 VIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVD 544
V+GI+ L QSLLPAIV LAED +WRVRLAII+++PLLA QLG EFF+EK+ +LCMSWL D
Sbjct: 392 VVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLED 451
Query: 545 HVYAIREAATLXLKKL 592
HVY+IREAA L+KL
Sbjct: 452 HVYSIREAAIKNLRKL 467
Score = 54.4 bits (125), Expect = 1e-08
Identities = 46/186 (24%), Positives = 87/186 (46%)
Frame = +2
Query: 5 VGQELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDL 184
V ++ A + +F +L D + VR + + L K+ E I +L ++
Sbjct: 197 VTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVL-KSDSE--IRHYLLQPLRSF 253
Query: 185 VCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNE 364
V D++ + +A+ + L+ +VG + L+ F+ +KD EVR I + + E
Sbjct: 254 VSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCE 313
Query: 365 VIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVD 544
++ + +++ ++P I EL D VR A+ ++ LA QLG+E E L + + L D
Sbjct: 314 LLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKD 373
Query: 545 HVYAIR 562
+R
Sbjct: 374 ENPEVR 379
Score = 51.2 bits (117), Expect = 1e-07
Identities = 38/162 (23%), Positives = 73/162 (45%)
Frame = +2
Query: 29 DLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHV 208
++ + Q L+ D VRAA + L K ++ M L +KD N V
Sbjct: 323 EIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKD----ENPEV 378
Query: 209 KSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLV 388
+ + S + ++ +VG + + LLP +T +D+ VRL II + + + +G++
Sbjct: 379 RLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFN 438
Query: 389 QSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKL 514
+ + + ED + +R A I+++ L G E+ E +
Sbjct: 439 EKMGNLCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETI 480
Score = 43.6 bits (98), Expect = 2e-05
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 1/191 (0%)
Frame = +2
Query: 23 RTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQ 202
+ L Q F L D VR AA F + K QE I +P L D
Sbjct: 164 KVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLVTK--QEAI--DEFIPLFNSLSNDDQD 219
Query: 203 HVKSALASVIMGLSPIVGRQNTIEH-LLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQ 379
V+ +++ L+ ++ + I H LL + + D R + +N + +V+G
Sbjct: 220 SVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPS 279
Query: 380 QLVQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAI 559
+ L+ V L +DT+ VR AI +P L + E++ + + D +
Sbjct: 280 LIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHV 339
Query: 560 REAATLXLKKL 592
R A + + L
Sbjct: 340 RAALGMNIGAL 350
Score = 28.3 bits (60), Expect = 0.90
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Frame = +2
Query: 5 VGQELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDL 184
+G E + + + L+D +R AA ++ L + I+P+ +
Sbjct: 432 LGVEFFNEKMGNLCMSWLEDHVYSIREAAIKNLR----KLTEIFGLEWATETIIPKFLAM 487
Query: 185 VCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNE 364
N + I ++P + + + +LP + D P +R N+ E +
Sbjct: 488 RSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAFEVLKP 547
Query: 365 VI--GIQQLV--QSLLPAIVELAED 427
V+ G V Q ++P + +L +D
Sbjct: 548 VLAAGGDSTVYEQQIIPLLEQLTKD 572
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = +2
Query: 260 QNTIEHLLPL--FLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTK 433
+N + L P+ + +LK + RLN + L + +G ++ L+P + E +D
Sbjct: 4 ENQVNDLYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDED 63
Query: 434 WRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLXLKKL 592
V A+ + + +G + L S + +R+ A L K+
Sbjct: 64 -EVLSALADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKV 115
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 43.6 bits (98), Expect = 2e-05
Identities = 29/112 (25%), Positives = 55/112 (49%)
Frame = +2
Query: 53 LLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVI 232
LL DS + VR + + C+ KA +I++ ++ + D + ++ A I
Sbjct: 600 LLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLND----TDWMLRCAFFESI 655
Query: 233 MGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLV 388
GLS +G ++ E++LPL L L D P V +++ + + E+ ++LV
Sbjct: 656 TGLSIFIGPRSVDEYILPLMLQALVDPEPAVLESVLGSFSGLIELHLFEKLV 707
Score = 33.9 bits (74), Expect = 0.018
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +2
Query: 296 TQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMPLL 475
T L D VR ++++ L + G + +L ++ DT W +R A E + L
Sbjct: 599 TLLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLRCAFFESITGL 658
Query: 476 AGQLGQEFFDEKLTSLCMSWLVDHVYAIREA 568
+ +G DE + L + LVD A+ E+
Sbjct: 659 SIFIGPRSVDEYILPLMLQALVDPEPAVLES 689
Score = 31.5 bits (68), Expect = 0.097
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Frame = +2
Query: 158 MILPQIKDLVCDAN-QHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLN 334
++LP + + N + K S++ LS + ++ ++ +LP +T L+D+ +VR++
Sbjct: 431 VLLPIVLSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRIS 490
Query: 335 -IISNLECVNEVIGIQQL-----VQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQ 484
+I+ V+ V I + + L P + D R R +P+LA Q
Sbjct: 491 ALITITRLVSNVTSIAPINAFLFQEYLFPDLQHFLFDMNSRTRATYASCLPILAKQ 546
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 33.5 bits (73), Expect = 0.024
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Frame = +2
Query: 5 VGQELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDL 184
+G++ T + ++F L + R AA + + L A E + LP+I
Sbjct: 1672 LGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDV-----LPEILKN 1726
Query: 185 VCDANQHVKSALASVIMGLSPIVGR--QNTIEHLLPLFLTQLKDECPEVRLNIISNLECV 358
H++ + S+++ L G Q + +P L+ L D+ V+ + + +
Sbjct: 1727 TSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMI 1786
Query: 359 NEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIE 460
+ V LLP + + D WR+RL+ ++
Sbjct: 1787 VNNYATKS-VDLLLPELEKGLFDNAWRIRLSSVQ 1819
Score = 31.9 bits (69), Expect = 0.073
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Frame = +2
Query: 161 ILPQIKDLVCDANQ--HVKSALASVIMGLSPIVGR--QNTIEHLLPLFLTQLKDECPEVR 328
IL + +L+ + H + AL +V S I+G + + LLPL LT D EVR
Sbjct: 1402 ILDSLSELISNRQNATHRQVALFAV-EAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVR 1460
Query: 329 LNIISNLECVNEVIGIQQL--VQSLLPAIVELAEDTKWRVRLAIIEHMPLLA 478
+ ++ V +++ V+ LLP +++ + WR + A +E + L++
Sbjct: 1461 E---ATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMS 1509
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 29.9 bits (64), Expect = 0.29
Identities = 28/147 (19%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Frame = +2
Query: 149 IMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVR 328
I++ IL ++ + + + ++S+ + L G + + L + L +E PEV
Sbjct: 816 IVSTILYRLNNKSANVREQAADLVSSITIVLKAC-GEEALMRKLGVVLYEYLGEEYPEVL 874
Query: 329 LNIISNLECVNEVIGIQQL---VQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEF 499
+I+ ++ + V+G+ + ++ LLP + + + +V+ I+ + +A + +
Sbjct: 875 GSILGAIKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYV 934
Query: 500 FDEKLTSLC---MSWLVDHVYAIREAA 571
+ +C + L H +IR AA
Sbjct: 935 SAREWMRICFELIDMLKAHKKSIRRAA 961
Score = 28.3 bits (60), Expect = 0.90
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 161 ILPQIKDLVCDANQHVKSALASVIMGLS---PIVGRQNTIEHLLPLFLTQLKDECPEVRL 331
I P + D + D + + ASVI LS +G ++ + HLL + + +E P V
Sbjct: 1053 ITPLLADALMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVIN 1112
Query: 332 NIISNLECVNEVIGIQQLVQSLLPAI 409
+ ++ + IG+ ++ L+ +
Sbjct: 1113 AVREGIDGIRNCIGVGPIMAYLVQGL 1138
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 28.3 bits (60), Expect = 0.90
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 104 KDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLL 283
++F L HQE + + P ++L N+H KS ++ + GLS G + + +
Sbjct: 1001 RNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVS--VQGLS---GGEKSFATIC 1055
Query: 284 PLFLTQLKDECPEVRLNIIS-NLECVNEVIGIQQLVQS 394
L CP L+ ++ VN ++ I+ +V S
Sbjct: 1056 MLLSIWEAMSCPLRCLDEFDVFMDAVNRLVSIKMMVDS 1093
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.2
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = +2
Query: 29 DLAQIFQALLKDSEAEVRAAAAGKVKDFC-MNLDKAHQEHIIMTMILPQIKDLVCDANQH 205
D+ +F A L+DSE EVR+ AA + C + + E++ IL +++ +
Sbjct: 894 DVFSLFMAALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYL---NILQKLQPFF--TQEV 948
Query: 206 VKSALASVIMGLSP-IVGRQNTI--EHLLPLFLTQL 304
++AL + I +S I+ QN I + +LP+ ++L
Sbjct: 949 FRTALDNAIGCISRLILHNQNAIPVDQVLPIVFSKL 984
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 495 SWPSCPASRGMCSMMARRTLHLVSSASSTMAGRRDCTSCWMPITSFTHSRLEIMLS 328
+WPS P SR + +A T+ L S R S +P +TH++LEI+++
Sbjct: 472 NWPSLPHSRLIVVAVAN-TMDLPERILSNRISSRLGLSR-VPFEPYTHTQLEIIIA 525
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 184 QVLDLWQDHGHDDVFLVSFIQVHTEVLDLP 95
++LDL++D ++ ++VH VLD P
Sbjct: 525 ELLDLFKDEEFGKADVIQLVEVHMPVLDAP 554
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 323 VRLNIISNLECVNEVIGIQQLVQSLLPAIVELA 421
V LNIIS++ N + ++ + SLLPA+ +L+
Sbjct: 467 VLLNIISSVIGRNAELDLENPISSLLPALEQLS 499
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/42 (21%), Positives = 19/42 (45%)
Frame = -1
Query: 282 RRCSIVFCLPTMGLRPMMTEASADLTCWLASHTKSLICGKIM 157
R S+++CLP+ +P+ + +H + C +M
Sbjct: 387 REASLLYCLPSTDFQPLFVSEKLSIQEVTYAHCVRIFCEHVM 428
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 290 FLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAED 427
F+ LKD P +++ NLE +E +Q+LV P+ + +A D
Sbjct: 984 FMVHLKDNSPVTLQDLVKNLE-ASEQQSLQRLVTE-KPSTLAVASD 1027
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 233 MGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAI 409
+GL V LL LT L+ E P+VR++I L + + LLP +
Sbjct: 345 IGLLTKVDNHLITNSLLTNLLTSLQSELPDVRVSIDEALSIIIPYYSNFRFSNELLPVL 403
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 290 FLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVEL 418
F +K C E + + S LE N + + Q+LLP + +L
Sbjct: 1043 FQALIKHFCSEPQKVVNSQLELHNSAYSLDAISQNLLPMLKDL 1085
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 432 SGGSVWPSSST---CLYWRDSWARSSSTRS 512
SGGSV+P++ST + W S + +++T S
Sbjct: 147 SGGSVYPTNSTTNSSISWNSSTSAATNTSS 176
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -3
Query: 388 HQLLDADHFIHTLEVGDYVESDFGTFILQLCEEQR 284
H +L++DH HT + SD F+ E +
Sbjct: 85 HSILNSDHEPHTASLSHICHSDSSVFLRAFSETNK 119
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 149 IMTMILPQIKDLVCDANQHVKSALASVIMGLSP 247
I T+ + I+ L D H KS MGL+P
Sbjct: 9 IDTLAINTIRTLAVDTTAHAKSGHPGAPMGLAP 41
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 206 VKSALASVIMGLSPIVGRQNTI-EHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQ 382
+KS I P+ + T+ E L P+ + Q EC + +N++SN+ ++ +
Sbjct: 177 LKSKSRQKISSSDPLEDLRLTLTECLNPINIVQAPKECAAILVNLMSNITQDDQKLVFLD 236
Query: 383 LVQS 394
L++S
Sbjct: 237 LLKS 240
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 205 VLVGITHQVLDLWQDHGHDDVFLVSFIQVHTEVLDLPSSCGSNLSLRVLEQ 53
VL G THQ+LD + HD + ++S + V L C L + +E+
Sbjct: 370 VLRGATHQLLDESERAIHDALAVLSQTVAESRV-TLGGGCAEMLMAKAVEE 419
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 356 VNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKL 514
+ V G++Q+ +P I + LA E MP+L +G E DE++
Sbjct: 648 IGRVAGLRQI--DCIPGIENIDVTNLVSGHLAYRESMPILLAAVGFEVLDEEV 698
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 32 LAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVK 211
L++I + L D E +A +++DF L EH + + + LV QH K
Sbjct: 294 LSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLV----QHTK 349
Query: 212 S 214
+
Sbjct: 350 N 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,971
Number of Sequences: 5004
Number of extensions: 54999
Number of successful extensions: 188
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -