Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26o23
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    28   1.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.0  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    27   3.0  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   4.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   5.3  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.3  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 212 ISFSPQNSYSSFKTRHFLIDPQHRHKPGSTIGP 114
           +S SP ++ SSF + HF +   +   P  T+ P
Sbjct: 18  LSLSPPDNNSSFLSNHFQVRKSYSQAPARTLKP 50


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 212 FIRICSSTALGFCYHTLTERKLRGSYVPRVLQGF 313
           F   CS T + +CY+  +E+ L  +Y   VLQ F
Sbjct: 94  FELFCSITNIRYCYYKESEKILGQTYGMLVLQDF 127


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +1

Query: 373 AYEAENERFDIKSETNIKQEAEDNNATRLED--VQNDTNHY---IDDADSGSLSSEPLIN 537
           AYEA     D+K E++  +E +  +A   +   +Q    H+   +D++D+ S+SS  L++
Sbjct: 133 AYEASKTPPDLKEESSTDEEMDSLSAAEEKPNFLQKRKYHWETSLDESDAESISSGSLMS 192

Query: 538 L 540
           +
Sbjct: 193 I 193


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 410 LLMSNLSFSASYATWSRVCSQISTCFR 330
           LLM++L F  SY+TW   C   +T  R
Sbjct: 82  LLMADLPFM-SYSTWEDACKNAATVMR 107


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 133  GLCRCCGSIKKCRVLNEEYE--FCGEKEIYSDMFFDCFGLLLSHLDRAQAERLICATCVT 306
            G+ R  GS  + RVL +E+E      + + SD+ F C  +L ++L R   E +I  T   
Sbjct: 813  GIYRISGSASQVRVLVDEFENGSIRMEHLTSDL-FACTSVLKTYLHRL-PEPVIPGTQYE 870

Query: 307  RLRDATAFRKQ 339
             L +A    K+
Sbjct: 871  ELLEAEKIEKE 881


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 209 SFSPQNSYSSFKTRHFLIDPQHRHKP--GSTIGPLT 108
           +FS   S  S KTR  + +P HRH    G T+  L+
Sbjct: 273 NFSRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLS 308


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 477 VILDIFKPCRIIVFRFLFYIRFAFNVEPFIFCFVC 373
           + L  +  CR  +  F+F+    F +E F +  +C
Sbjct: 148 ITLSFYTMCRSSILIFVFFFSVIFRIEMFDWILLC 182


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 368 WSRVCSQISTCFRNAVASRSLVTHVAHMSLSA-CALSRCDNKSPKQSKNISE 216
           W R CSQ    +R+ V + S +  +  +S      L+R  +++PK    + E
Sbjct: 239 WKRACSQTDGTYRSYVHNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPE 290


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 361  LLQVAYEAENERFDIKSETNIKQEAEDNNATRLEDVQNDTNHYID 495
            L QV+Y  E+  F+I  + +  ++  +    R+ ++++  ++Y +
Sbjct: 921  LKQVSYRLESRLFEISKQLDNSEQENNKFRERIAELESHLSNYAE 965


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 439 DNNATRLEDVQNDTNHYIDDADSGSLSSE 525
           DN +T    V ND+ H   DAD  S+SSE
Sbjct: 865 DNASTASTKVSNDS-HLKPDADKKSVSSE 892


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 206 FSPQNSYSSFKTRHFLIDPQHRHKPGSTIGPLTL 105
           F   N+Y  F T H L D +     G++  P++L
Sbjct: 255 FHHHNNYKMFNTTHTLEDDKFLQGKGTSNNPISL 288


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 352  EQTLLQVAYEAENERFDIKSETNIKQEAEDNNATRLEDVQNDTNHYIDDADSGS 513
            E+T L    E  N + ++KSET      E     + E+VQ D+N  +  + S +
Sbjct: 1143 EKTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSST 1196


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 436  EDNNATRLEDVQNDTNHYIDDAD-SGSLSSEPL 531
            +++  T  +  QN   HY+D+A+ S SL  E L
Sbjct: 1244 DESPQTLFQTFQNPVVHYLDEAEASSSLKEEQL 1276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,130
Number of Sequences: 5004
Number of extensions: 54124
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)