Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26o16
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.60 
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    28   1.4  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   2.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.2  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    25   9.8  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   9.8  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 171 VVKALFTIYGIYLVYVSLTNVPDCP 245
           VVKAL  I+ + ++Y++++NV D P
Sbjct: 25  VVKALALIFSLLILYLTISNVSDSP 49


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 422 VHSDAFAQFFSHWIFKYKFRERVKFLNKYDHFLTNIQG 535
           V    + +FF H     + +E VK LN   +F+TN  G
Sbjct: 457 VFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNG 494


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 314 VIFSDAMESEIRALFEDYRLMERKIKSFKNTAWTYGVHSD 433
           +I S  ME  IRALFE Y L + +  S +  +    VH D
Sbjct: 98  IILSSGMEPFIRALFEQY-LGKEEASSIEIVSNDINVHPD 136


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 LVFGVFSKIISYLFVVKALFTIYGIYLVYVSLT 227
           L+F V+  IIS   V   + T YG YLV  SLT
Sbjct: 13  LLFFVYLLIISTRLVAADMNTQYGCYLVDSSLT 45


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 TIYGIYLVYVSLTNVPDCPKSTSIYD 266
           TI G Y +YVS++N  D  K+  I +
Sbjct: 26  TIDGAYRIYVSVSNNKDLKKNKEILE 51


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 200 YLSGVRVADERS*LPKVDVNLRWGVDNNTHDTR 298
           YL+G+R   ERS  P    + R  +   +H +R
Sbjct: 162 YLNGIRERRERSISPSFSHHSRTSISGQSHSSR 194


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 346 DFRFHRVTKYHPVG 305
           +F  H V KYHP G
Sbjct: 124 EFEMHHVEKYHPAG 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,558
Number of Sequences: 5004
Number of extensions: 49479
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)