Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26o13
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   7.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   7.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 132 SYYEFIKIVTLVS 170
           SYY +I ++TLV+
Sbjct: 639 SYYSYIGVLTLVA 651


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 363 FFFYVFKMIYSSYYV 319
           F+F++ K + + YY+
Sbjct: 257 FYFFLHKQVLNRYYL 271


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 277 AMNLQHGICLDFI 239
           AMN+  G+C+ FI
Sbjct: 362 AMNVWDGVCMCFI 374


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 277 AMNLQHGICLDFI 239
           AMN+  G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 277 AMNLQHGICLDFI 239
           AMN+  G+C+ FI
Sbjct: 382 AMNVWDGVCMCFI 394


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 277 AMNLQHGICLDFI 239
           AMN+  G+C+ FI
Sbjct: 331 AMNVWDGVCMCFI 343


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 196 KSDIIHYILLTRVTIF 149
           ++DI  YI++ R T+F
Sbjct: 220 ETDITFYIIIRRKTLF 235


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 363 FFFYVFKMIYSSYYV 319
           F+F++ K + + YY+
Sbjct: 257 FYFFLHKQVLNRYYL 271


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 191 RHYSLHSTN*GNNFYKFVIRK 129
           +HY ++S      F+K  +RK
Sbjct: 120 KHYGVYSCEGCKGFFKRTVRK 140


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 191 RHYSLHSTN*GNNFYKFVIRK 129
           +HY ++S      F+K  +RK
Sbjct: 120 KHYGVYSCEGCKGFFKRTVRK 140


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 66  ILRVL*VKFYHFISMLYNKQLFSYY 140
           + R+  V F+     L NKQ F Y+
Sbjct: 233 LFRIPLVSFFSTSPELSNKQRFEYF 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,196
Number of Sequences: 438
Number of extensions: 1705
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)