Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26o09
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 115 9e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 64 4e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 54 4e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 8e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 4e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 5e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 9e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.044
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 0.72
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 0.95
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 2.2
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 24 2.9
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 5.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 6.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 23 8.8
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 23 8.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 23 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 115 bits (277), Expect = 9e-28
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRXQGVMVGMGQKDSYVGDEA 259
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPR G+MVGMGQKDSYVGDEA
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEA 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.7 bits (148), Expect = 4e-12
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRXQGVMVGMGQKDSYVGDEA 259
+ +DNGSG KAGFAGDD P+ +FP+ VGR + + VM QKD +VG EA
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEA 62
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 53.6 bits (123), Expect = 4e-09
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RXQGVMVGMGQKDSYVGDEA 259
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEA 58
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 8e-06
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRXQGVMVG--MGQKDSYVGDE 256
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 4e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 5e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 193
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 9e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 202
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.044
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 249 PTYESFCPM-PTITP*XRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 22.6 bits (46), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 192 PTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHILN 76
PT+ + S+P P P ST++ TSSS +L+
Sbjct: 357 PTVPPTSTSSTSTP-------PPPASTSSTGTSSSPLLS 388
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 0.72
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 252 SPTYESFC--PMPTITP*XRGLPTIEGNTARGASSPAKPAL 136
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 146 NRPCTYRSHCLLPTRQLP 93
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAG 154
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 176 IRREEHHLLRNRPCTYRSHCLLPTRQLPRRT 84
+ RE H L +N P P++++PR T
Sbjct: 169 VERELHTLRQNTPSQNEQAEATPSKEIPRET 199
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 189 TIEGNTARGASSPAKPALHIPEPLSTT 109
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.0 bits (47), Expect = 6.7
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -3
Query: 258 ASSPTYESFCPMPTITP*XRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHIL 79
+++P+Y + +PT + L + TA ASS PLS+ N+ T++S
Sbjct: 404 STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASS---------TPLSSVNSTTATSASS 454
Query: 78 N*YSIIK*VTST 43
S + T+T
Sbjct: 455 TPLSSVNSTTAT 466
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 22.6 bits (46), Expect = 8.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 246 TYESFCPMPTITP*XRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
TY+S + TITP + NT +SS ++ P S N +S +
Sbjct: 429 TYDSHTFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYSVTPTSAENYTSSEA 481
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 119 NGSGMCKAGFAGDDAPRAVFPSIV 190
N G+ ++GF ++ R+ FPS V
Sbjct: 404 NACGVTRSGFEAENPFRSDFPSTV 427
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 117 TMAPVCARPVSQE 155
+M PVC+ PV QE
Sbjct: 339 SMVPVCSNPVYQE 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,030
Number of Sequences: 5004
Number of extensions: 19444
Number of successful extensions: 64
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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