Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26o09
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.62 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   7.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 0.62
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 257 PRLLRTSLSVPCRPSHPXGGAFRRSRGIRREEHHLLRNRPCTYRSHC 117
           PR++    +V CR S P G A   S    R E  L     C Y +HC
Sbjct: 704 PRIMDLD-NVMCRTSGPRGVAI-VSASTARSEQFL-----CRYEAHC 743


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 128 GMCKAGFAGD 157
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 146 NRPCTYRSHCLLPTRQLPR 90
           N   TY + CLL  ++ PR
Sbjct: 478 NMAATYMNECLLNIQKSPR 496


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 226  HADHHTLXAGPSDDRGEYGARSIISCETG 140
            H   H      +DD+  +  R ++SC +G
Sbjct: 1686 HCTIHRTQVKETDDKICFTMRPVVSCASG 1714


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 149 RNRPCTYRSHCLLPT 105
           RNRP    S C L T
Sbjct: 156 RNRPAYLASKCALTT 170


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 165 GASSPAKPALHIPE 124
           G + PA+  +HIPE
Sbjct: 22  GWNVPAEELIHIPE 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,211
Number of Sequences: 438
Number of extensions: 1514
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)