Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26o01
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 55 9e-09
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 48 1e-06
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 29 0.66
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.87
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 27 2.0
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.0
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.6
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.5
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 27 3.5
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.6
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 6.1
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 55.2 bits (127), Expect = 9e-09
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Frame = +1
Query: 214 SSLFINI--RKGKVTSIVTQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 381
S FI + +K K++++ TQN+D L K G K+I+ HG+ C+KC +++D EL
Sbjct: 227 SHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGSFATATCIKCKHKVDGSEL 286
Query: 382 QEILTENNPDMESSFSMIRPD---GDVELSREQVEKFRAPLCPKCE------GPLKPDIV 534
E + N + +P V ++++ F E G +KPDI
Sbjct: 287 YEDI--RNQRVSYCNECGKPPLKLRRVGQNKKEKHYFSDGDSESSEDDLAQPGIMKPDIT 344
Query: 535 FFGDNVPKYRVEQVRK-EVTSSDAVFVMGSSLTV 633
FFG+ +P +V E+ +D + +G+SL V
Sbjct: 345 FFGEALPDSFFNKVGSGELEETDLLICIGTSLKV 378
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 48.4 bits (110), Expect = 1e-06
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Frame = +1
Query: 262 TQNVDRLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHELQEILTENNPDMESSFSMI 435
TQN+D L AG + +IE HG+ +C++C YE+
Sbjct: 117 TQNIDTLERLAGVPDKALIEAHGSFQYSRCIEC-YEM----------------------- 152
Query: 436 RPDGDVELSREQVEKFRAPLCPKCEGPLKPDIVFFGDNVPKYRVEQVRKEVTSSDAVFVM 615
+ E R + + + P C C+G +KP IVF+G+ +P E + K+ D V+
Sbjct: 153 ---AETEYVRACIMQKQVPKCNSCKGLIKPMIVFYGEGLPMRFFEHMEKDTKVCDMALVI 209
Query: 616 GSSLTVY 636
G+SL V+
Sbjct: 210 GTSLLVH 216
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 451 VELSREQVEKFRAPLCPKCE--GPLKPDIVFFGDNVPK 558
+++S VEKF K + GP+K D FF +N PK
Sbjct: 109 IDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAPK 146
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 130 PTYIISCPVPLPYFRILHKFLILYRFVITTGIQTNILRSVVR 5
PTY+ P+ PYFR L + YR +T ++ + + +R
Sbjct: 335 PTYVP--PIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIR 374
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 522 FQRPFTLWAEWS-SEFFYLFPRQFNIAIR 439
F++ +LW EWS + F L P Q I IR
Sbjct: 279 FRKNLSLWREWSANSAFSLHPLQLRILIR 307
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 2.0
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Frame = +1
Query: 310 IELHGTSYLVQCLKCPYEIDRHELQEILTENNPDM-ESSFSMIRPDGDVELSREQVEKFR 486
I LHGT +V C +C + L + NPD+ + + + PD E ++ R
Sbjct: 181 IPLHGTLEVVSCTRCSF----------LKKFNPDIFDRNGVTVCPDCKTENEVRRIAGKR 230
Query: 487 APLCPKCEGPLKPDIVFFGDNVP-KYRVEQVRKEVTSS--DAVFVMGSSLTVYSSYRII 654
+ + EG L+P IV + + P + V + S D + V G+S + RII
Sbjct: 231 SVI----EGCLRPRIVLYNEIHPDSESIGSVCSQDLKSRPDCLIVAGTSCKIPGVKRII 285
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 382 QEILTENNPDMESSFS-MIRPDGDVELSREQVEKFRAPLCP 501
+E TE NP M S +I + +LSR ++F+ P CP
Sbjct: 345 KEQATEENPPMMMSCGHVIVKESLRQLSRNGSQRFKCPYCP 385
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 226 INIRKGKVTSIVTQNVDRLHHKAGSEKVIELHGTSYLVQCLKCPYEID 369
+NI K IV ++ D K G+E +++L L L+ +E+D
Sbjct: 240 LNILKSAFVKIVLEDQDPWASKEGAENLLKLLPDKDLASALRKKWEVD 287
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 298 SEKVIELHGTSYL-----VQCLKCPYEIDRHELQEILTENNPDMESSFS 429
+EKV+ +G SY +Q KCP+ I+ + + +NP+M S ++
Sbjct: 82 NEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWA 130
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 382 QEILTENNP-DMESSFSMIRPDGDVELSREQVEKFRAPL 495
Q I EN P +E+ ++R DG+VE +++ KF+ L
Sbjct: 6 QAIKKENEPIQVENPTELVRDDGEVEGYQKEEGKFKLVL 44
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 116 FLPSTFALLSDTSQILDTV*VCDYYGHTDQHPPIC 12
FL S F + T+Q + T+ +C ++G P+C
Sbjct: 212 FLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLC 246
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 557 LGTLSPKNTISGFKGPSHFGQSGARNFSTCSLDNST-SPSGLIMEKL 420
LGT+ K + + HF FS C L N T SP G++ + L
Sbjct: 278 LGTMQKKFSSGVYSSAQHFIDDMNLMFSNCFLYNGTESPVGVMGKNL 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,268
Number of Sequences: 5004
Number of extensions: 71010
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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