Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26o01
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -2

Query: 581 FLTCSTRYLGTLSPKNTISGFKGPSHFGQSGA-RNFSTCSLDNSTSPS 441
           FL C++  L     +N   G KGP  F +S   ++   C L N    S
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRDFPRSHRFKSLPRCQLSNKRDRS 89


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 491 GARNFSTCS 465
           G RNFSTCS
Sbjct: 113 GCRNFSTCS 121


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 491 GARNFSTCS 465
           G RNFSTCS
Sbjct: 112 GCRNFSTCS 120


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 8   DYRSEDVGLYARSNHKPIQYQEFVKYPKVRQRY 106
           DY    + L   + H P+ YQ + K   + Q+Y
Sbjct: 416 DYTPSSLELGEVAVHDPVFYQLYKKVMNLYQQY 448


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 166 MCDVRLHTTESRPTYIISCPVPLPYFRILHKFLILYRFVITTG 38
           M D+R    E   +  +S  V LP F++L          +TTG
Sbjct: 163 MRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTG 205


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 166 MCDVRLHTTESRPTYIISCPVPLPYFRILHKFLILYRFVITTG 38
           M D+R    E   +  +S  V LP F++L          +TTG
Sbjct: 102 MRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTG 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,307
Number of Sequences: 438
Number of extensions: 5119
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)