Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26n24
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    44   1e-05
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
 Frame = +2

Query: 131 KIQITYLFIIPQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL----- 295
           K ++  LF+ P GTP  LIP            R  +L +RL ANIIAGHL +++L     
Sbjct: 146 KAKVFGLFL-PSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIF 204

Query: 296 RRTGTN-ISFYXXXXXXXXXXXXXXXESAVAIIQSYVITIL 415
              G N I+F                E  +A IQ+YV  IL
Sbjct: 205 TFMGLNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 112 ILYG*IKNTNHIFIHNSTRNTLYFNTIYSNY*NHQKYYSTW 234
           +++   K+TN  F   +T   L  + I SN   +++++STW
Sbjct: 24  VIFANYKHTNDFFKITATTYALINSVIVSNNCCNRRFHSTW 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,950
Number of Sequences: 5004
Number of extensions: 12582
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)