Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26n24
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   2.9  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 151 IHNSTRNTLYFNTIYSNY*NHQKYYS 228
           I + +  T++ N  Y+NY N + YY+
Sbjct: 304 ISSLSNKTIHNNNNYNNYNNKKLYYN 329


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 312 LVPVLLNNVINKCPAIMLAVNRT 244
           L+P +LNN  N+C +  + +  T
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANT 78


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 169 NTLYFNTIYSNY*NHQKYYST 231
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 240 KVPGRIIFLMVSIIT 196
           KV  R+  LM+S+IT
Sbjct: 635 KVADRVSMLMISVIT 649


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,315
Number of Sequences: 438
Number of extensions: 1176
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)