Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26n12
         (166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   5.6  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   7.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   7.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   7.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    18   9.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    18   9.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    18   9.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    18   9.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 57  KIGSPPPAGS 28
           KIGSP PA S
Sbjct: 656 KIGSPTPAES 665


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 116 GFGIISHIISQE 151
           G  +ISHIIS++
Sbjct: 130 GIELISHIISKQ 141


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 4/12 (33%), Positives = 11/12 (91%)
 Frame = +1

Query: 124 YNFSYYFTRKRK 159
           +++++Y TR+R+
Sbjct: 27  FHYNHYLTRRRR 38


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 129 IIPNPGKIKI*TSGC 85
           ++P P  IKI   GC
Sbjct: 57  VVPKPLCIKICAPGC 71


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 129 IIPNPGKIKI*TSGC 85
           ++P P  IKI   GC
Sbjct: 57  VVPKPLCIKICAPGC 71


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 2   DRNLNTSFFDP 34
           +R   TSFFDP
Sbjct: 547 NRGRATSFFDP 557


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 124 YNFSYYFTRKRK 159
           ++F+ Y TR+R+
Sbjct: 27  FHFNRYLTRRRR 38


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 92  QDVQKIKINVDIKLGLLLQQDQKMMYLSFD 3
           +D ++ + NVD  L L   +  +MM  +FD
Sbjct: 26  EDSKEERKNVDTVLVLPSIERDQMMAATFD 55


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 92  QDVQKIKINVDIKLGLLLQQDQKMMYLSFD 3
           +D ++ + NVD  L L   +  +MM  +FD
Sbjct: 26  EDSKEERKNVDTVLVLPSIERDQMMAATFD 55


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 92  QDVQKIKINVDIKLGLLLQQDQKMMYLSFD 3
           +D ++ + NVD  L L   +  +MM  +FD
Sbjct: 26  EDSKEERKNVDTVLVLPSIERDQMMAATFD 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,423
Number of Sequences: 438
Number of extensions: 836
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)