Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26n07
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 1e-04
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 35 0.011
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 35 0.011
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 33 0.046
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.081
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.11
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 31 0.11
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 31 0.11
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 31 0.11
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 31 0.11
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.19
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.19
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 31 0.19
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 30 0.25
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 30 0.25
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 30 0.33
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.33
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 0.43
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.75
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 29 0.75
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.00
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 28 1.00
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 28 1.00
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 28 1.3
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 27 1.7
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 27 1.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 1.7
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 1.7
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 27 2.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.3
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.3
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 2.3
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 2.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 27 3.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 3.0
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 26 4.0
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 5.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 5.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.0
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 7.0
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.0
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/109 (21%), Positives = 53/109 (48%)
Frame = +3
Query: 234 APKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPK 413
+PKK + +AK PE +K++ +KK+K+ +++ ++ + + + E++
Sbjct: 50 SPKKSKKEAKRASSPEP-------SKKSVKKQKKSKKKEESSSESESESSSSE-SESSSS 101
Query: 414 KGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQ 560
+ + E ++S+ S E+ + +EE S S ++ EEE+
Sbjct: 102 ESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEE 150
Score = 33.5 bits (73), Expect = 0.026
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Frame = +3
Query: 270 EDPETESVEAEVDEK-----NIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKK-GRKKN 431
E E E +++EK + SE + + + ++E +E+T KK G ++
Sbjct: 145 ESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSES 204
Query: 432 VEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPS 569
+ + S+ E D + SE + SED + E+ P+
Sbjct: 205 SSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPA 250
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +3
Query: 270 EDPETESVEAEVDEKNIV-SEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPP 446
E +ES +E +E+ IV +E+K + +++ + ++E + + KK +
Sbjct: 111 ESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSES 170
Query: 447 VENKSTDEPSV---EDEVAVSEENNPSEDGSETNGHIEEEQVPS 569
++S E S E+E V E+ ++GS + E S
Sbjct: 171 SSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDS 214
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.7 bits (76), Expect = 0.011
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = +3
Query: 270 EDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPV 449
E+ S + + + E+ ++ ++ ++ +E + EE+ + +KK V
Sbjct: 21 EENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASE- 79
Query: 450 ENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEE 557
+++S E S E+E SEE++ D SE+ E E
Sbjct: 80 DSESDSESSEEEEETESEEDSEVSDESESESESESE 115
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 34.7 bits (76), Expect = 0.011
Identities = 30/94 (31%), Positives = 42/94 (44%)
Frame = +3
Query: 291 VEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDE 470
VE D I +E+KTKR R G+ E KK +K V+E +E D+
Sbjct: 99 VEKVPDAPPIKAERKTKRPRARRAANEGEHN----ESVPAKKVKKNTVKEEEIEK---DD 151
Query: 471 PSVEDEVAVSEENNPSEDGSETNGHIEEEQVPSG 572
S E V EE P+ + +E + H E+ V G
Sbjct: 152 ESATTETPVKEE--PTGEETEAD-HEEKASVDHG 182
Score = 33.5 bits (73), Expect = 0.026
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 240 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKG 419
K+ R + E ESV A+ +KN V E++ ++ ++A E EET
Sbjct: 115 KRPRARRAANEGEHNESVPAKKVKKNTVKEEEIEKDDESATTETPVKEEPTGEETEADHE 174
Query: 420 RKKNVEEPPVENKSTDEPS 476
K +V+ +K+T E S
Sbjct: 175 EKASVDHGNFSDKTTSEAS 193
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 32.7 bits (71), Expect = 0.046
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
Frame = +3
Query: 225 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEET 404
+ + P K + + ++P ++ ++ ++ KT+ +A D G G E+
Sbjct: 31 EENTPSKKNFETQSPDEPSPKTTDS-TGARDANLSLKTQEPIVSADDAKGAQGKGADEKE 89
Query: 405 APKKG----RKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQV 563
K+ + E P E K E +E E P E G E EEE++
Sbjct: 90 EKKETIQPPEEVKTEPPQPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEI 146
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 31.9 bits (69), Expect = 0.081
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Frame = +3
Query: 225 DNDAPKKG-RGKAKVVEDPETESVEAEVDEKNI------VSEKKTKRG----RKAAGDTN 371
D +PK+ R + V P+ VE E E N+ +SE K G +++A ++N
Sbjct: 160 DRRSPKRNHRSPSPVSFAPQKSPVENET-ETNVDNGDTKISESNEKSGTEVEQQSAPNSN 218
Query: 372 GQDENGKIEETAPKKGRKKNVEEPPVE---NKSTDEP-SVEDEV-AVSE--ENNPSEDGS 530
G +E +E G+ ++ +EPP E N S ++P + EV A SE E+NP+ S
Sbjct: 219 GNEEVNNLEPV----GQNESKQEPPKEENSNVSQEQPEQAQPEVSAASEQPESNPTTTES 274
Query: 531 E 533
+
Sbjct: 275 Q 275
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 276 PETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPK--KGRKKNVEEPPV 449
PE + K +++ + + RK D + +D N KIE+ K K K+ EE
Sbjct: 139 PEPSKRKRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFNE 198
Query: 450 ENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPS 569
+ +P+ E + +E +PS+ S + I+ + PS
Sbjct: 199 NGPPSGQPNGHIE-SDNESKSPSQKESNESEDIQIAETPS 237
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/96 (25%), Positives = 37/96 (38%)
Frame = +3
Query: 276 PETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVEN 455
P T S + V K +K R + T G+D RK ++ P+EN
Sbjct: 159 PSTHSPQLSVPSKTSTIDKTDTRSTEK---TKGKDIFSNARNQKGNSSRKN--KKAPLEN 213
Query: 456 KSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQV 563
EP + E +SE+ D + +E+E V
Sbjct: 214 HKEKEPLLPKEEKLSEQAKRERDDLKNIMQLEDESV 249
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/101 (20%), Positives = 43/101 (42%)
Frame = +3
Query: 255 KAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNV 434
K ++ +T S E + K+I S + ++G + + EN K +E K K +
Sbjct: 171 KTSTIDKTDTRSTE-KTKGKDIFSNARNQKGNSSRKNKKAPLENHKEKEPLLPKEEKLSE 229
Query: 435 EEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEE 557
+ + + +EDE + + SED + + + + E
Sbjct: 230 QAKRERDDLKNIMQLEDESVSTTSVHDSEDDNLDSNNFQLE 270
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 234 APKKGRGKAKVVEDPETESVEAE---VDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEET 404
AP+ G + +D T+S++ + V+ ++V K+K K+ GDT+ D N K E T
Sbjct: 852 APEPTGGTNSISQDT-TQSLQMQSNSVNSSSMVDASKSKE--KSGGDTSALDSNAKNEPT 908
Query: 405 APK 413
A K
Sbjct: 909 AAK 911
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 31.5 bits (68), Expect = 0.11
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Frame = +3
Query: 267 VEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENG---KIEETAPKKGRKKNV- 434
V D ET + ++ E N EK + R G + G +E+ I+ PKK KKN
Sbjct: 161 VVDVETTTTKSSTAETN-APEKYSTRSGFGFGFSTGTNESEITPNIKVLPPKK--KKNAS 217
Query: 435 ------EEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETN 539
E+P ++ D S + E + +N SE+ +TN
Sbjct: 218 WGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTN 258
Score = 25.4 bits (53), Expect = 7.0
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Frame = +3
Query: 225 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEE- 401
+ +AP+K ++ T + E+E+ V K K+ N E EE
Sbjct: 175 ETNAPEKYSTRSGFGFGFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEED 234
Query: 402 --TAPKKGRKKNVEEPPVENKSTDEPSVED-EVAVSEE--NNPSEDGSETN-GHIEEE 557
+ + ++ + ENK T+EPS +D E V E+ N SE + + GH E E
Sbjct: 235 YLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQKLQPSFGHPEFE 292
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 31.5 bits (68), Expect = 0.11
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 258 AKVVEDPETESVEAEVDEKNIVSEKKTKRGR--KAAGDTNGQDENGKIEETAPKKGRKKN 431
++ V ET S + + DE+++ S+KK K+ K + D+ Q+ + K + T + +K +
Sbjct: 264 SRKVVTKETASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLS 323
Query: 432 VEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPSGRGR 581
V+ + + DE S + S + S+ + NG ++V +G+ +
Sbjct: 324 VKN-AAKTTNRDEDSKGKKAKASPK--VSQSSLKANGTTAIKKVKAGKNK 370
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 419 SFFWCCFLYFTILILSICVTGSFPSAFGFLFRYNVLFINF--SFYRLRFRIFNYFC 258
S F C L+F L+ + SF +F FLF + +FI + SF L F F + C
Sbjct: 111 SLFRCLLLFFFFLLFFL----SFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 KRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEP-SVEDEVAVSEENNP 515
KR +A + G DE+ + EE PK R+ N ++ DEP V + A+ +E +
Sbjct: 45 KRIHQAFQEDEG-DEDWEEEEHKPKAKRRYNTRSNESFSEGDDEPFEVSESSALEDELSD 103
Query: 516 SED 524
SED
Sbjct: 104 SED 106
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 264 VVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRK 425
V + +++V +E D KN+V K ++ +A N + + + +T P+ R+
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRKTTPEGNRR 1400
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 270 EDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPV 449
+DP T E+ + + E+ + K + GQ+ N + EE+ KK RKK V+E +
Sbjct: 95 KDPAT----GEIFRADHLVEEVLEARLKGDKEARGQNSNDQPEESDDKKKRKKKVKE--I 148
Query: 450 ENKSTDEPSVED-EVAVSEENNPSED 524
D+ +VE+ E +++ +N D
Sbjct: 149 RATRLDDKTVEEYEFILAQIDNYDGD 174
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.25
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 228 NDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKR---GRKAAGDTNGQDEN---G 389
+DAP + E+ E + +E E DE+ E++ + GD +G+ EN G
Sbjct: 165 DDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKG 224
Query: 390 KIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSE 503
EE + ++ EE + N S E E++ S+
Sbjct: 225 SEEEEEEEIDIEEEEEESALANASAAEEKPEEKPETSQ 262
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 462 TDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVPSGRGR 581
T+E S EDE EE+ ED + G E+++ PS + +
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSK 241
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.33
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 261 KVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEE--TAPKKGRKKNV 434
K+ E S ++++++ ++ + + K A D QD +EE T + ++ +
Sbjct: 4091 KLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTLDEDIQQDDF 4150
Query: 435 EEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVP 566
+ +++ +E E+ V +EE +EDG +++ +E+ +VP
Sbjct: 4151 SDLAEDDEKMNEDGFEENVQENEE--STEDGVKSDEELEQGEVP 4192
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/89 (21%), Positives = 42/89 (47%)
Frame = +3
Query: 285 ESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKST 464
E + E +E++++ ++ + AA N D K ++ K K+ +E E + +
Sbjct: 4001 EKLWDEPNEEDLLETEQKSNEQSAAN--NESDLVSKEDDN--KALEDKDRQEKEDEEEMS 4056
Query: 465 DEPSVEDEVAVSEENNPSEDGSETNGHIE 551
D+ ++DE+ + N S+ E H++
Sbjct: 4057 DDVGIDDEIQPDIQENNSQPPPENEDHLD 4085
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.43
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 270 EDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVE--EP 443
E+P +S + E N +SE T G KAA G +T P VE +P
Sbjct: 390 EEPTIDSKSPTLPEHNPLSEDDTSNGDKAA------KRKGSFNDTKPIVNVPSIVEIDDP 443
Query: 444 PVENKSTDEPSVEDEVAVSEENNPSEDGSE 533
+ + +EP ++ + S +P+ED +E
Sbjct: 444 TILDIVEEEPLARND-SFSSPYSPAEDMAE 472
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.7 bits (61), Expect = 0.75
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Frame = +3
Query: 282 TESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPP----- 446
T V + ++NI +KT + T +D NG I P + E P
Sbjct: 611 TTDVSSPETKQNIADIRKTTLTDQTEEFTERRDNNGSIPSKQPSDEQHLGKESLPSQQST 670
Query: 447 VENKSTDE--PSVE--DEVAVSEENNPSEDGSETNGHIEEEQVPS 569
V N E PS + + +E+ PS+ +ET H+ +E PS
Sbjct: 671 VSNHHRKESIPSKQPTEGQHARQESLPSQQTTETK-HLRKESTPS 714
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 28.7 bits (61), Expect = 0.75
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -3
Query: 407 CCFLYFTILILSICVTGSFPSAFGFLFRYNVLFINFSFYRLRFRIFNYFCFA 252
CC ++ + I IC S P + +L Y IN + F I + +A
Sbjct: 155 CCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIINEFPFEQAFEILSNALYA 206
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.00
Identities = 18/86 (20%), Positives = 37/86 (43%)
Frame = +3
Query: 267 VEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPP 446
++ P +E E +E N++ ++ D++ EE + K +
Sbjct: 76 IQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSAHTEEESSNDNLVK-ITAGT 134
Query: 447 VENKSTDEPSVEDEVAVSEENNPSED 524
+ + DEP V+++ +SEE+ ED
Sbjct: 135 IISDIMDEPVVDEDDKLSEEDLSKED 160
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.00
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +3
Query: 294 EAEVDEKNIVSEKKTKRGRKAAGDTNGQ----DENGKIEETAPKKGRKKNVEEPPVENKS 461
EA +NI +++ ++ + + Q +E+ +E T P + VE + K
Sbjct: 356 EAPTSSENIKADQPENSTKQENPEEDMQIKDAEEHSNLEST-PAAQQTSEVEANNHQEKP 414
Query: 462 TDEPSVEDEVAVSEENN-PSEDGSE 533
+ P+VE ++ V+EENN P +G E
Sbjct: 415 SSLPAVE-QINVNEENNTPETEGLE 438
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 1.00
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 369 NGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHI 548
N Q+++GK+ ++ K+V K +EPS ++ + V +E N D +N
Sbjct: 247 NSQEDDGKLSCSS------KDVTSSGFSMKGLNEPS-QERLPVEKEQNDKSDEEGSNNEQ 299
Query: 549 EEEQ 560
EE+Q
Sbjct: 300 EEKQ 303
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +3
Query: 276 PETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVEN 455
P+ + + K V EK +AG + K+E P+ +E E
Sbjct: 387 PDLLDMSTLYESKGTV-EKAVSATVPSAGAQVQKHNEEKVETPKPEAQPVSKPKESAEEQ 445
Query: 456 KSTDEPSVEDEV-AVSEENNPSEDGSETNGHIEEEQV 563
K + EP V+ + S+ PS+ E N H +EE V
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDN-HQKEETV 481
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 306 DEKNIVSEKKTKRGRKAAGDTNGQD--ENGKIEETAPKKGRKKNVEE---PPVENKST-- 464
+E++ SEK K+ +K+ +G + ++G IE + K +KK +E P +++ T
Sbjct: 140 EEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRK 199
Query: 465 DEPSVEDEVAVSEENNPSEDGSE---TNGHIEEEQVPSGR 575
E ++ E N D + ++ +PSGR
Sbjct: 200 KEEKARKLASMLESENKDNDANAAPLNKTDAFKDGLPSGR 239
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 351 KAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGS 530
K+ G+ + Q+E+ + + + + EP E + DEPS +D +EN E+
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKD-----DENKDVEEEQ 409
Query: 531 ETNGHIEEEQV 563
E EEEQ+
Sbjct: 410 EQEQ--EEEQI 418
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 279 ETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPK 413
E E E+D V E+KTK A+ Q+EN ++E A K
Sbjct: 179 EPTETETEIDANKAV-EEKTKMNYPASPTFTTQEENKEVESPANK 222
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 425 LPSFFWCCFLYFTILILSICVTGSFPSAFGFLFRYNVLFI 306
LP +W FLY T ++ C+ SA F N LF+
Sbjct: 198 LPEGYWWVFLYTTCVLAMCCILCCLGSAI-FAKASNALFV 236
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 279 ETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENK 458
ETE+V ++D + EKK K + A D DE + + P+ +E E K
Sbjct: 3 ETEAVVDQIDLNGALPEKKKKPKKSVAFD----DEVDAVSKDGPEASSAGATDEDDSERK 58
Query: 459 ST 464
S+
Sbjct: 59 SS 60
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 468 EPSVEDEVAVSEENNPSEDGSETNGHIEEEQ 560
E + EDE+ SEE DG + NG EEEQ
Sbjct: 36 EDAYEDEIE-SEEEYIEADGEKDNGMDEEEQ 65
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/103 (24%), Positives = 49/103 (47%)
Frame = +3
Query: 258 AKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVE 437
A V+ DP T++ E D K +++EK+ K + + G+ E I ++ P+ V
Sbjct: 154 AIVLYDPTTDADEIIPDIKEVLAEKRKK--DELLKNRKGKKE---ISDSEPESDHDSCVS 208
Query: 438 EPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEEEQVP 566
V + ST++ + S+ P++ + G I++E+ P
Sbjct: 209 TDTVASCSTEQSLITSN--TSKHRRPNKSLKDLLG-IQKEKPP 248
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 445 RWKINLLMNPQLKMKWQCLRKIIL 516
RWKI P L +W+C R ++L
Sbjct: 78 RWKIQPKKVPTLAEQWECTRLVLL 101
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/67 (19%), Positives = 29/67 (43%)
Frame = +3
Query: 366 TNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSETNGH 545
T+ +DE+ E +KK + +N + E++ + ++ + D E G
Sbjct: 74 THNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKNDEFELGGE 133
Query: 546 IEEEQVP 566
E+++P
Sbjct: 134 ENEDEMP 140
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 440 FLYILLPSFFWCCFLYFTILILSICVTGSF 351
F + LP FFW +Y+T+ I + G +
Sbjct: 80 FFMLALPIFFWSGCIYYTLDITQLFAAGVY 109
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 225 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEET 404
D D + + V+ + E E V+A VDEK+ E+ + D N DE+ E+T
Sbjct: 27 DADMDQDKNPEENVMNEKEDEDVDA-VDEKS--GEEDVEMDTME--DENENDED--TEQT 79
Query: 405 APKKGRKKNVEEPPVE 452
+ KK ++ +E P+E
Sbjct: 80 SEKKETEETPKENPLE 95
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +3
Query: 249 RGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKK 428
R KAK E ++ + E + + T R + DT+ Q E +P K
Sbjct: 124 RNKAKSSETSDSSNTSQSFKENRALKDTATSRPLALSSDTSYQKSEKAKSEKSPFLSTSK 183
Query: 429 NVEEPPVENKSTDEPSVEDEVA 494
N + +K+T++ E V+
Sbjct: 184 NSDAN--YSKTTNQKEAEKAVS 203
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 231 DAPKKGRGKAKVVEDPETESVEAEVDEKNIVS-EKKTKRGRKAAGDTNGQDENGKIEETA 407
D GR + + E+ ES E+E DE I++ EKK + DT+ +DE +
Sbjct: 25 DVSNVGRKRPRTKEEGYYES-ESEEDEDQILNKEKKEGQSEDMFSDTS-EDEKRTLPNDE 82
Query: 408 PKKGRK--KNVEEPPVENKSTDEPSVEDEVAVSEENN 512
+K R +N + + +K V ++ + E++N
Sbjct: 83 AQKRRDFIENGDAERLAHKGLRNKEVLNDDSDDEDDN 119
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 267 VEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNV 434
V T+ ++ + ++S G AG + + +G IE+ APK+ +K+N+
Sbjct: 176 VSHTHTQVADSATESSPLLSYTGNHNG---AGTSKPVNNHGSIEQDAPKQTKKRNL 228
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 255 KAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKK 428
+ K ED + +E EVD+++ EKKTK+ ++ +T ++ I P + K+
Sbjct: 226 EVKNEEDDKAPKIE-EVDDESEKKEKKTKKVKETTTETEELNKTKPIWTRNPSEVTKE 282
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +3
Query: 261 KVVEDPETESVEAEVDEK-------NIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKG 419
+V E+ ETE V+ E D+K + SEKK K+ +K T +E K + +
Sbjct: 217 EVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETEELNKTKPIWTRNP 276
Query: 420 RKKNVEEPPVENKSTDEPSVEDEVAV 497
+ EE KS ED +AV
Sbjct: 277 SEVTKEEYASFYKSLTN-DWEDHLAV 301
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 353 FPSAFGFLFRYNVLFINFSFYRLRFRIFNYFCFA 252
FP+ G F N L I + Y+ FRIF + +A
Sbjct: 159 FPTKAGLPFPSNFLVIVKAIYKQMFRIFAHMYYA 192
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 443 RFLYILLPSFFWCCFLYFTI 384
R +YILL + WC FL+ I
Sbjct: 222 RAVYILLLALGWCLFLFIAI 241
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 312 KNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEV 491
+ I S+K+ D + +EN + + K PP E + + + ++E
Sbjct: 437 QEISSQKQLSTDASQTQDASIANENETEIASLDEGSESKPTPSPPAEQLTDQKQNEDNED 496
Query: 492 AV-SEENNPSEDGSET 536
V ++ N P+++ +ET
Sbjct: 497 KVKADSNGPTQNENET 512
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Frame = +3
Query: 225 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTN-------GQDE 383
DN+A + + +E + ++ E + K + KKTK D + +D+
Sbjct: 462 DNNANSSEKDET-TIEKYKRKAAERKQRRKELRQLKKTKDDEGEGSDVDLGFDDPFFKDK 520
Query: 384 NGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEE 506
+ KKG+ +E+P +K E V ++ SE+
Sbjct: 521 DASRNNKKNKKGKHTQIEDPTAASKEELENLVREDENDSEQ 561
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.3
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Frame = +3
Query: 282 TESVEAEVDEKNIVSEKKTKRGRK-----AAGDTNGQDENGKIEETAPKKGRKKNVEEPP 446
T SV + + S KT+ +K A G Q K +N
Sbjct: 3 TRSVSMKQTSQRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVRGG 62
Query: 447 VENKSTDEPSVEDEVAVSEENNPSEDGSETNGHIEE 554
V K+TD S +A SEEN S GS + + ++
Sbjct: 63 VAAKATDSSSNVTSLASSEENVSSVSGSAKSNNSQQ 98
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 459 STDEPSVEDEVAVSEENNPSEDGSETN 539
S +P+ + + EN+ S DGSETN
Sbjct: 631 SETQPAPKQNINEEFENSTSTDGSETN 657
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 504 ENNPSEDGSETNGHIEEE 557
EN+ SEDGSE+ G +EE
Sbjct: 335 ENSDSEDGSESIGSEDEE 352
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 273 DPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKN 431
D + E + EK EKK K+ +K + + EE K +KK+
Sbjct: 444 DIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/88 (22%), Positives = 35/88 (39%)
Frame = +3
Query: 267 VEDPETESVEAEVDEKNIVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPP 446
++D + VE E D + K + +TNG + K T+ + N P
Sbjct: 588 LQDVGLQYVEDESDSDETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANP 647
Query: 447 VENKSTDEPSVEDEVAVSEENNPSEDGS 530
+ + EDEV + E+ S++ S
Sbjct: 648 SKLFNISSDDSEDEVPIIEDTTASDEES 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,672
Number of Sequences: 5004
Number of extensions: 35872
Number of successful extensions: 257
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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