Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26n07
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.47 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.62 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/72 (16%), Positives = 34/72 (47%)
 Frame = +3

Query: 357 AGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSET 536
           A + N  ++N   +    + G ++N +    +NK       +++   + +N+  ++G+  
Sbjct: 437 ADNQNANNQNADNQNANKQNGNRQN-DNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQ 495

Query: 537 NGHIEEEQVPSG 572
           NG+ + +   +G
Sbjct: 496 NGNKQNDNKQNG 507


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +3

Query: 318 IVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPS--VEDEV 491
           +V E   +    A     G+ +NG+ +           + EP VE  S+  P+  +    
Sbjct: 462 VVEEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAP 521

Query: 492 AVSEENNPSEDGSETNG 542
           + S  ++P   G+   G
Sbjct: 522 SSSTSSSPPAKGAAAAG 538


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 323 YNVLFINFSFYRLRFRI 273
           + VLF+ FSF R R ++
Sbjct: 19  FGVLFVLFSFLRTRTKL 35


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 323 YNVLFINFSFYRLRFRI 273
           + VLF+ FSF R R ++
Sbjct: 19  FGVLFVLFSFLRTRTKL 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,220
Number of Sequences: 438
Number of extensions: 2231
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)