Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26m24
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical ...    31   0.45 
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    30   1.0  
Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical ...    29   1.8  
AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    27   9.6  

>AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical
           protein W04C9.2 protein.
          Length = 102

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 118 KFGVKSVLLGSAVYYTIDKGVWK-DSATTAAIYDELEKGMSPYVGELKSQVPYELPALPS 294
           K G+K  L+  AV  +ID  +W  ++   + +Y +L+K + P       Q       LP+
Sbjct: 9   KLGIKVGLVAGAVKLSIDNDIWSTNNVKGSELYQKLKKYILPGTVVFPEQ-------LPT 61

Query: 295 NDRISYLFKYYWNCGVKATFRFLVELPTHTSNAA 396
            + +       WN  V + F  +  +P+  +  A
Sbjct: 62  VEDVQLKAGGKWNSAVDSVFTTIENVPSSVNTVA 95


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 287 YLLMTGYHICSSTTGIAVLKLHLDF*SNCLPILVMQLSRHTTL--FHHLWKLQNHIK 451
           YL+  GYH  + T GI V      F S  L +LV Q  R  TL  F   WK++ +++
Sbjct: 270 YLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATLRIFKCRWKVKTNVR 326


>Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical
           protein ZC302.3 protein.
          Length = 236

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 130 KSVLLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRIS 309
           KS+L G     T++  V K+   T ++ D ++   + ++G+ +     EL  +P    I 
Sbjct: 71  KSMLDGLKSQCTVNTVVLKNMLITKSVEDSVKLNAARFLGKSEK----ELMDIPE---IK 123

Query: 310 YLFKYYWNC 336
            +F+ YWNC
Sbjct: 124 QMFQQYWNC 132


>AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1b protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 163 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 291
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 52  TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 94


>AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1a protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 163 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 291
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 175 TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 217


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 227 KECHHMSGN*RAKFHTNYQHYLLMTG 304
           +EC  +SG    K+ TNY + LL+ G
Sbjct: 110 QECERISGKSETKYETNYCYVLLIPG 135


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 401 LKAALLVWVGNSTKNLNVALTPQFQ*YLNKYDILSLEGN 285
           LK  L   +G   ++LN+A+  +F  Y N     SLEG+
Sbjct: 88  LKGPLETPIGKGHRSLNLAVRKEFSLYANVRPCRSLEGH 126


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 170 IKVCGKIVLRQRRYMMNLKKEC-HHMSG 250
           + +C KIV  +R +++N   EC  H++G
Sbjct: 598 VDICSKIVNFERNFLLNKYSECSRHLAG 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,987
Number of Sequences: 27780
Number of extensions: 266554
Number of successful extensions: 585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)