Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26m21
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    71   2e-13
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    71   2e-13
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    33   0.040
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.21 
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    28   1.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   3.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   3.5  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   4.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   6.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   8.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.0  

>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +3

Query: 324 PPVKYSLAKSEETITEVTT--LSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICH 497
           P +K   +  +  + EV T  L NG+    + + G F   GV + +G RYE    +G+ H
Sbjct: 30  PALKSFYSTQDPALNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSH 89

Query: 498 FLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEV 677
           F+++L+F AT +    + M  +LE  GG   C  SR++ +Y  +  +  +++++++LAE 
Sbjct: 90  FMDRLAFQATERTPVGE-MKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAET 148

Query: 678 TLRPILSADE 707
            L P +  D+
Sbjct: 149 VLAPKIQEDD 158


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
 Frame = +3

Query: 318 NLPPVKYSLAKSEETITEVTTLSNGLRVASEKK-FGQFCTAGVVIDSGPRYEVAYPNGIC 494
           NLP +    A +    TE TTL NGL VA+E   + Q  T  V +D+G R E A  NG  
Sbjct: 6   NLPKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAA 65

Query: 495 HFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAE 674
           HFLE L+F  T K  ++  +  E E  G   +   SR+ TVY   A    +     VLA+
Sbjct: 66  HFLEHLAFKGT-KNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLAD 124

Query: 675 VTLRPILSA 701
           +     +SA
Sbjct: 125 ILTNSSISA 133


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 486 GICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQV 665
           G+ HF E L F  T K+   +   + LE H GI +   + + T Y        L      
Sbjct: 65  GLAHFCEHLLFMGTKKYPDENEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDR 124

Query: 666 LAEVTLRPI 692
            A+  + P+
Sbjct: 125 FAQFFIDPL 133


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
 Frame = +3

Query: 36   ILREIEKFRKTLIFKISNLKNTLTDYVFISPLFVFGSNMSHVTDVK----FLVTRLFSLK 203
            +   +EK   T    +SNL     + + ++P  +   N+S +  +K     L+T  F   
Sbjct: 3454 LFANVEKPGSTFTNMVSNLITDARELMKLTPETINDDNLSEIKHLKSRKHLLLTETFKTL 3513

Query: 204  NSFQAPKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEETITEVTTL 383
             +F   ++ ++   +  + LS ++  +  +P      L++  V  SL KS + I +  TL
Sbjct: 3514 KAF-GLQYRVKAGIE--ENLSNLRNLLAVIPTFPVTSLSIEKVDRSLMKSLDFIPKFQTL 3570

Query: 384  S 386
            +
Sbjct: 3571 A 3571


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 682 NVTSAKT*VTASNPLESALVAYTVVSREPWQSHIPP*RSNSRSITSRVANLWVAPK 515
           NVTS K  ++A+  L  +      +S++P   H P   +  R + S + +L+ +P+
Sbjct: 174 NVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAP--STRQRDLKSSILSLYASPR 227


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = -2

Query: 673 SAKT*VTASNPLESALVAYTVVSREPWQSHIPP*RSNSRSITSRVANLWVAPKLSFSRK* 494
           + K  V+    L S +    V SR+          +  R+++    NL V PK+S     
Sbjct: 215 TCKEEVSTYEGLNSQIELSPVKSRDSQNKSAKNLSTAYRTVSGESRNLMVDPKVSPYGNS 274

Query: 493 QIPLG*ATSYL-GPESITTPAVQNCPNFFSEATLKPL 386
           + PL  +++YL    SI   +  + P   SE T K L
Sbjct: 275 RTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTL 311


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 216 APKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEE 359
           APKW I +F + G   S   G++    P  + +L+L  ++Y L K++E
Sbjct: 605 APKWRINEFDETG---SVYYGALPYNYPEDDVLLDLDGLQY-LVKNDE 648


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 66  TLIFKISNLKNTLTDYVFISPLFVFGSNMSHVTDVKFLVTRLFSLKNS 209
           ++  K   LKN ++D    SP+++ G    H +  ++L    FS+  S
Sbjct: 274 SITIKCKILKNGISDLAMKSPMYLPGPVEPHFSPSRYLTFEGFSVDES 321


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 392 LKSCFREKIWTVLYCWCC 445
           LK C + K W V + +CC
Sbjct: 312 LKMCTKTKYWNVFFPFCC 329


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 264 SQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEETITEVTTLSNGLRVAS 407
           S +  S TP+   +    + P  +YS+  S   IT  T L++   + S
Sbjct: 567 SSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITS 614


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 201 KNSFQAPKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEETITEVTT 380
           K S   PK +  + ++   KL     S  P+PPLSE        K+S A   E I+  + 
Sbjct: 225 KTSSSVPKQSTGENTKKAVKLETPLTSTPPIPPLSEP-------KHSPATVNEHISPPSA 277

Query: 381 LSN 389
           L+N
Sbjct: 278 LTN 280


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 564  IHEALHRVLQIYGLPQSLVSRENDKFHWD 478
            IH  + +++ ++ LP+ + S EN+   WD
Sbjct: 1651 IHRLVFKLVVVFLLPREVASGENNYSWWD 1679


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 459 PRYEVA-----YPNGICHFLEKLSFGATHKFATRDVMLR 560
           PRY+++     Y N   HFL+ +      +F T+D++ R
Sbjct: 115 PRYQISERNTVYLNAFFHFLDFIGMFTPFRFETKDLVRR 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,740
Number of Sequences: 5004
Number of extensions: 54350
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)