Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26m20
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.7  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   4.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -1

Query: 375 FPNDMVNTPSLYVTSAPFKFGASSINCSKKSHSDSKVSLQASSNTRGSSSLR-ILSDNLR 199
           F  D++ TP++YV++ P    +S+I  +  +  D  VS+  S   R ++ L+  L+  LR
Sbjct: 92  FVRDLIWTPTVYVSNEP----SSAI--TGNNVKDVLVSIDPSGMVRLNTRLQATLNCGLR 145

Query: 198 LLK 190
           L K
Sbjct: 146 LEK 148


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -2

Query: 443 QTWGSSTKSVYLVSAGLSHMSRAFLMIWLIHHRCMLRQLL 324
           ++W    +S    S    H  +  L++W  H   +  +LL
Sbjct: 45  RSWSRPRESAQTTSKAGIHRKKVLLLVWWDHKGIVYFELL 84


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  TYRPVAGAAANQ*SRPHRDTKKQ 150
           T+RP AG   N    P+  TKKQ
Sbjct: 73  TFRPTAGMTFNGGVGPNGLTKKQ 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,883
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)