Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26m17
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    24   2.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    23   4.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   5.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   7.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    22   9.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    22   9.4  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  NKNTSKFMKPNMLM**YFIYLIPIQKSIIRE 138
           N     F+KPN  +  YF+ ++    S+IRE
Sbjct: 172 NNTQFDFLKPNNALYPYFMRIVQQYTSLIRE 202


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 66  HETKYVDVIIFYLFDSNTKKYNSRVIFFL 152
           ++ ++ DVI FYL D  T++Y S +  FL
Sbjct: 813 YKEEFADVIFFYLVD--TEQYASLLHDFL 839


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  IIFYLFDSNTKKYNSRVIFFLPG 158
           ++ Y+F     K++  V+ FLPG
Sbjct: 890 LLKYIFTEGDPKFSKCVLVFLPG 912


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 140 HSRIILFCIGIK*IKYYHINIFGFMNLDVF 51
           H R I  C  IK ++  H  + GF++L ++
Sbjct: 227 HRRSINLCPKIKKLQLSHDTLHGFLDLVLY 256


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 111 SNTKKYNSRVIFFLPGALN 167
           S  K  N R+  FLP ALN
Sbjct: 317 SADKMINQRLSIFLPSALN 335


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 93  IFYLFDSNTKKYNSRVIFFLP 155
           IF++FD  T  Y    IF+ P
Sbjct: 283 IFHMFDMVTLMYEGEQIFYGP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,801
Number of Sequences: 5004
Number of extensions: 9695
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)