Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26m16
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 33 0.055
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 32 0.073
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 29 0.68
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 28 1.6
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.6
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 26 6.3
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 8.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.4
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 8.4
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 32.7 bits (71), Expect = 0.055
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 251 WNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEE 397
W KK S NL E G S K +PN + RA +++D DEE
Sbjct: 222 WFMKKESEENLAEAGSASPMYKLKTVPNARPVTGPRASGSDDELDYDEE 270
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 32.3 bits (70), Expect = 0.073
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 380 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRK 481
ID +E VET+ P KKE +K EK+ + +K++
Sbjct: 445 IDVEETVETISEKPSKKEKKDKKEKKKEKSKKKR 478
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 494 KGQVEFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYS 646
K +F+ Y+ + ND KAM ++KNY+ + K L S+ + F+ A S
Sbjct: 365 KPSFDFLKYITEST-NDIKAMTGEQKNYFLQIKKFLSSR-EPFIDFSANIS 413
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 185 RRRMNRKQKST--GNVQCSIVKEAWNNKKTSARNLREMGLVSDPN 313
RR N+K K+ GN ++++ W+ T +N +GL++ PN
Sbjct: 19 RRNANKKAKAKIYGNF---VIQQNWDKHATLRQNYARLGLLATPN 60
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 308 PNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAK 463
P +K + +++ V ++DS+E+ E+ P++E + +EK K
Sbjct: 36 PATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPAYYPEREAIQLIEKAIK 87
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 6.3
Identities = 24/111 (21%), Positives = 50/111 (45%)
Frame = +2
Query: 341 QTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITY 520
Q + +R ++ ++ E E + + +++ ++LEKQ K + + Q +
Sbjct: 88 QQESEREQKSARKVKRAELEEKLAKR--REQELQELEKQEKIEAEILESRLQEQRKVALD 145
Query: 521 LLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYSVYLQERGNA 673
L+ ND K + +KK+YY T Q + + +P+Q + Q + A
Sbjct: 146 ELELDRNDLKKVLDNKKSYYLRTKTQPSLFYRPYYLLPSQRTQLEQMKSEA 196
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.4
Identities = 29/150 (19%), Positives = 57/150 (38%)
Frame = +2
Query: 260 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVA 439
K T R + L + ++ +QT+I R N+ + + + R +
Sbjct: 18 KDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLA---LTALKRKKMHENEL 74
Query: 440 EKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKT 619
K+E ++ F + + F T + G + AM+ ++ + Q+ KI+
Sbjct: 75 VKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAE--AMKSIQRGMDADKVDQIMDKIRD 132
Query: 620 FMGIPAQYSVYLQERGNAGQELDEDELKKQ 709
I + S + E+DEDEL +
Sbjct: 133 QQTISEEISTMISTPVGLNAEIDEDELANE 162
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 555 WKETKRIIIRKLGNNCDLK*KHSWVY 632
WK+ II ++ NC L + SW++
Sbjct: 698 WKQANMSIITQIYLNCSLDLRDSWMF 723
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 8.4
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 203 KQKSTGNVQCSIVKEAWNNKKTSARN--LREMGLVSDPNKTI-KIPNFKQTQIQRAKQMV 373
K+KS G+ ++ A NK N +E + +D T P+ + ++ A + V
Sbjct: 324 KKKSKGSALMVDIEAADINKTEENINNQFQEASVTADNMNTWDNTPSVEN--VESANENV 381
Query: 374 NQIDSDEEVETVVRLPPKKEVAEKLEKQAKAP 469
N ++DE+++ ++ + A ++EK A+ P
Sbjct: 382 NNHNADEQMDEKIKSLVEGNSAYEIEKGAQEP 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,867
Number of Sequences: 5004
Number of extensions: 49339
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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