Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26m16
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81143-4|CAB03516.1| 189|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 32 0.37
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 32 0.37
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 1.1
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 30 1.5
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 30 1.5
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 30 1.5
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 30 1.5
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 30 1.9
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 30 1.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.6
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 29 3.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.5
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 28 5.9
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 5.9
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 28 5.9
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 28 5.9
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 28 7.9
U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of ... 28 7.9
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 28 7.9
AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain ... 28 7.9
>Z81143-4|CAB03516.1| 189|Caenorhabditis elegans Hypothetical
protein ZK265.6 protein.
Length = 189
Score = 73.3 bits (172), Expect = 2e-13
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Frame = +2
Query: 185 RRRMNRKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAK 364
+++ N+K+ S V I+K W+ KT N+R+MG+ +PN + I ++ I
Sbjct: 24 KKKDNKKKLSKSAVP--IIKYTWDETKTPRENVRDMGIAFNPNDAVPIAEHRKEIIDAEP 81
Query: 365 -QMVNQIDSDEEVETVVRLPPKKEVAE---------KLEKQAKAPRKRKFMLPKGQVEFI 514
V+ + E + R +K+ A K E++A+A + RKF L + E
Sbjct: 82 IDGVSIVVPKPEKKVTGRKKNEKQAAHIISNLEQQVKEEEEARAGQDRKFRLFHRETELC 141
Query: 515 TYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKT 619
Y+L ++G D++AM RD KN +Q T KQ KI+T
Sbjct: 142 VYMLARHGEDFQAMTRDPKNLWQYTPKQWAKKIRT 176
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +2
Query: 209 KSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQID- 385
K G+ I ++A ++K L ++ P K+ KIP K +I+ ++ + +
Sbjct: 885 KKNGSETAEIAEKAQISEKKPVNRLVIDEVLKSPQKSEKIPE-KAQEIEEIEESPKKSEK 943
Query: 386 SDEEVETVVRLPPKKEVA-EKLEKQAKAPRK 475
+ E+ + + +P K E A EK ++ K+P+K
Sbjct: 944 APEKPQEIQEIPKKSEKAPEKPQEIEKSPKK 974
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +2
Query: 209 KSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQID- 385
K G+ I ++A ++K L ++ P K+ KIP K +I+ ++ + +
Sbjct: 883 KKNGSETAEIAEKAQISEKKPVNRLVIDEVLKSPQKSEKIPE-KAQEIEEIEESPKKSEK 941
Query: 386 SDEEVETVVRLPPKKEVA-EKLEKQAKAPRK 475
+ E+ + + +P K E A EK ++ K+P+K
Sbjct: 942 APEKPQEIQEIPKKSEKAPEKPQEIEKSPKK 972
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 362 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 493
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 362 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 493
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 362 KQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLP 493
++ V+Q+D E++E V + PK EV + ++ + KR +LP
Sbjct: 1859 QKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILP 1902
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 323 KIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPK---KEVAEKLEKQAK--APRKRKFM 487
KI + Q+ +++++ + E + V+L + K++ L K A + RK
Sbjct: 494 KIGRQPKLQLAYLTKLMSRNEGTEFADKAVQLYAEYDQKKLLPFLRKNANYNVNKARKLC 553
Query: 488 LPKGQVEFITYLLDKYGNDYKAMERDKKNY 577
KG +E YLL K GN Y A++ + Y
Sbjct: 554 SDKGYIEETIYLLAKSGNHYDAVKMMVREY 583
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 323 KIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPK---KEVAEKLEKQAK--APRKRKFM 487
KI + Q+ +++++ + E + V+L + K++ L K A + RK
Sbjct: 494 KIGRQPKLQLAYLTKLMSRNEGTEFADKAVQLYAEYDQKKLLPFLRKNANYNVNKARKLC 553
Query: 488 LPKGQVEFITYLLDKYGNDYKAMERDKKNY 577
KG +E YLL K GN Y A++ + Y
Sbjct: 554 SDKGYIEETIYLLAKSGNHYDAVKMMVREY 583
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 323 KIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPK---KEVAEKLEKQAK--APRKRKFM 487
KI + Q+ +++++ + E + V+L + K++ L K A + RK
Sbjct: 542 KIGRQPKLQLAYLTKLMSRNEGTEFADKAVQLYAEYDQKKLLPFLRKNANYNVNKARKLC 601
Query: 488 LPKGQVEFITYLLDKYGNDYKAMERDKKNY 577
KG +E YLL K GN Y A++ + Y
Sbjct: 602 SDKGYIEETIYLLAKSGNHYDAVKMMVREY 631
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 410 VRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQ 502
V+ PPKK + +K++K +AP+ K KG+
Sbjct: 199 VKSPPKKMIIQKIQKHQEAPKPAKVPKIKGE 229
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 361
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 362 KQMVNQIDSDEE 397
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 361
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 362 KQMVNQIDSDEE 397
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical protein
ZK524.2d protein.
Length = 2155
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 RRRMNRKQKSTGNVQCSIVKEAWNNKKTS-ARNLREMGLVSDPNKTIKIPNFKQTQIQRA 361
RRR ++ K + C I+ W +KT + M + P KT+ P K+ +I R
Sbjct: 862 RRRKRKRVKIKKSRSCPIL---WKTEKTPHPMKSKSMTCIRIPKKTVIAPLRKEIKIVRM 918
Query: 362 KQMVNQIDSDEE 397
K + +SD +
Sbjct: 919 KPPAARCESDSK 930
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 506 EFITYLLDKYGNDYKAMERDKKNYYQE 586
E +TYL KYG D+K D+ NY E
Sbjct: 45 ESVTYLNTKYGQDWKKAWLDRVNYVTE 71
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +2
Query: 200 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 379
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 380 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAME 559
S E+ PK++ EK E++ K+P K++ K E + K + K+ E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAE 1767
Query: 560 RDKKN 574
K+
Sbjct: 1768 EKPKS 1772
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +2
Query: 200 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 379
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 380 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAME 559
S E+ PK++ EK E++ K+P K++ K E + K + K+ E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAE 1767
Query: 560 RDKKN 574
K+
Sbjct: 1768 EKPKS 1772
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +2
Query: 200 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 379
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 380 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAME 559
S E+ PK++ EK E++ K+P K++ K E + K + K+ E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAE 1767
Query: 560 RDKKN 574
K+
Sbjct: 1768 EKPKS 1772
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +2
Query: 200 RKQKSTGNVQCSIVKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQ 379
+K+KS V+ K KK S+ + V P K K P QT ++ +
Sbjct: 1654 KKEKSPEKVE---EKPTSPTKKESSPTKKTDDEVKSPTKKEKSP---QTVEEKPASPTKK 1707
Query: 380 IDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFITYLLDKYGNDYKAME 559
S E+ PK++ EK E++ K+P K++ K E + K + K+ E
Sbjct: 1708 EKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKSAE 1767
Query: 560 RDKKN 574
K+
Sbjct: 1768 EKPKS 1772
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 281 LREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQA 460
L E ++ PN+ ++ ++ Q + + + D++++ P + E EKLEK
Sbjct: 268 LEEAEILEKPNEPMESETLERHQQLEKNEEPREYEEDKKLKE----PGEHEETEKLEKPN 323
Query: 461 KAPRKRKFM 487
K +KFM
Sbjct: 324 KLENSKKFM 332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 332 NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 478
N K+T +++ AK+ Q + DE+++ + KK AEKLE + +A K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 338 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 475
K+ Q+ +++ Q D DE+ T PPK E +E K+ +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 332 NFKQT-QIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKR 478
N K+T +++ AK+ Q + DE+++ + KK AEKLE + +A K+
Sbjct: 13018 NIKKTAEVEAAKK---QKEKDEQLKLETEVVSKKSAAEKLELEKQAQIKK 13064
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 338 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRK 475
K+ Q+ +++ Q D DE+ T PPK E +E K+ +K
Sbjct: 13698 KRDPAQKTEEISKQDDGDEKKTTTDGKPPKPEDSEATPKKRVVKKK 13743
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 260 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVR---LPPKK 430
+K+SA+N ++ + SD K K + + K + D DEE E V + P+
Sbjct: 75 RKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQI 134
Query: 431 EVAEKLEKQAKAP 469
++LE++ +AP
Sbjct: 135 HSDDELEEEDEAP 147
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +2
Query: 338 KQTQIQRAKQMVNQIDSDEEVETVVRLPPKKEVAEKLEKQAKAPRKRKFMLPKGQVEFIT 517
K+ + ++AK+ +ID +E++ KKEV E +K+ + KR+ + K + E ++
Sbjct: 255 KKDEDEKAKKEKERIDKEEKI--------KKEVEEAEKKKKEEKEKRRKEVKKNREEQLS 306
Query: 518 YLLDKYGNDYKAMERDK 568
+ ND K + +K
Sbjct: 307 INPEMSRNDKKDVVEEK 323
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 260 KKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVR---LPPKK 430
+K+SA+N ++ + SD K K + + K + D DEE E V + P+
Sbjct: 75 RKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQI 134
Query: 431 EVAEKLEKQAKAP 469
++LE++ +AP
Sbjct: 135 HSDDELEEEDEAP 147
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +2
Query: 239 VKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRL 418
VK++ NK+ S + E SD ++ + K + + + ++ + ++EV+ +
Sbjct: 165 VKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKK- 223
Query: 419 PPKKEVAEKLEKQAKAPRKRK 481
KK V ++ E + +AP K+K
Sbjct: 224 KSKKVVKKESESEDEAPEKKK 244
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +2
Query: 239 VKEAWNNKKTSARNLREMGLVSDPNKTIKIPNFKQTQIQRAKQMVNQIDSDEEVETVVRL 418
VK++ NK+ S + E SD ++ + K + + + ++ + ++EV+ +
Sbjct: 165 VKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKK- 223
Query: 419 PPKKEVAEKLEKQAKAPRKRK 481
KK V ++ E + +AP K+K
Sbjct: 224 KSKKVVKKESESEDEAPEKKK 244
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 533 YGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYSVYLQERGNAGQELDED 694
YG + E ++ Y+E QLRS + + M P + + ++G +E+ +D
Sbjct: 404 YGMMSQVREHPRRQLYREYLSQLRSTMISRMAKPEEVLIVENDQGEVVREMVKD 457
>U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of
potassium channelsprotein 28 protein.
Length = 523
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 506 EFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYSVYLQERGNAGQEL 685
EF++YL Y + + R K + Q +S+ + MG S+ L + + ++
Sbjct: 222 EFLSYLYRSYRGFKRKLRRQSKKITSQYRSQSQSRSSSVMGSSKAGSMNLHDIDSDSEDS 281
Query: 686 DEDELK 703
DEL+
Sbjct: 282 AGDELR 287
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 302 SDPNKTIKIPNFKQTQIQRAKQMVNQID-SDEEVETVV 412
S +K KIP+ Q+++ AK+ ++QID D+E + V
Sbjct: 1242 SASSKRSKIPSTSQSRVGSAKKQISQIDEQDKEPDVFV 1279
>AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain K
channel protein.
Length = 523
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 506 EFITYLLDKYGNDYKAMERDKKNYYQETWKQLRSKIKTFMGIPAQYSVYLQERGNAGQEL 685
EF++YL Y + + R K + Q +S+ + MG S+ L + + ++
Sbjct: 222 EFLSYLYRSYRGFKRKLRRQSKKITSQYRSQSQSRSSSVMGSSKAGSMNLHDIDSDSEDS 281
Query: 686 DEDELK 703
DEL+
Sbjct: 282 AGDELR 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,866
Number of Sequences: 27780
Number of extensions: 272371
Number of successful extensions: 1044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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