Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26m11
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX572623-2|CAM12863.1| 308|Homo sapiens low density lipoprotein... 50 8e-06
BC029770-1|AAH29770.2| 308|Homo sapiens low density lipoprotein... 50 8e-06
AY389348-1|AAQ90407.1| 308|Homo sapiens LDL receptor adaptor pr... 50 8e-06
AL606491-1|CAI16483.1| 308|Homo sapiens low density lipoprotein... 50 8e-06
AK024397-1|BAB14908.1| 221|Homo sapiens protein ( Homo sapiens ... 50 8e-06
BC040164-1|AAH40164.1| 168|Homo sapiens PID1 protein protein. 43 0.001
AY317148-1|AAP79437.1| 250|Homo sapiens NYGGF4 protein. 42 0.003
AK125359-1|BAC86145.1| 248|Homo sapiens protein ( Homo sapiens ... 42 0.003
AK000708-1|BAA91333.1| 299|Homo sapiens protein ( Homo sapiens ... 42 0.003
AB075874-1|BAD38656.1| 271|Homo sapiens putative protein produc... 42 0.003
AC007677-1|AAX88839.1| 158|Homo sapiens unknown protein. 41 0.004
Z99127-7|CAI18937.1| 815|Homo sapiens RAB GTPase activating pro... 31 4.1
BC041888-1|AAH41888.1| 605|Homo sapiens RABGAP1L protein protein. 31 4.1
AL591108-1|CAH70225.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL161671-6|CAI16281.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL157958-1|CAB76100.1| 582|Homo sapiens hypothetical protein pr... 31 4.1
AL136377-4|CAI22935.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL031286-3|CAI22382.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL031286-2|CAI22381.1| 605|Homo sapiens RAB GTPase activating p... 31 4.1
AL031286-1|CAI22380.1| 582|Homo sapiens RAB GTPase activating p... 31 4.1
AL022400-4|CAI22878.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL022400-3|CAI22877.1| 605|Homo sapiens RAB GTPase activating p... 31 4.1
AL022400-2|CAI22876.1| 582|Homo sapiens RAB GTPase activating p... 31 4.1
AL022171-4|CAI20384.1| 815|Homo sapiens RAB GTPase activating p... 31 4.1
AL022171-3|CAI20383.1| 605|Homo sapiens RAB GTPase activating p... 31 4.1
AL022171-2|CAI20382.1| 582|Homo sapiens RAB GTPase activating p... 31 4.1
AL021069-2|CAI23486.1| 605|Homo sapiens RAB GTPase activating p... 31 4.1
AK095838-1|BAC04635.1| 815|Homo sapiens protein ( Homo sapiens ... 31 4.1
BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein. 30 9.4
BC020609-1|AAH20609.1| 472|Homo sapiens Unknown (protein for IM... 30 9.4
AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating p... 30 9.4
AK131449-1|BAD18594.1| 599|Homo sapiens d) (GAPCENA). protein. 30 9.4
AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating ... 30 9.4
AF161357-1|AAF28917.1| 308|Homo sapiens HSPC094 protein. 30 9.4
>BX572623-2|CAM12863.1| 308|Homo sapiens low density lipoprotein
receptor adaptor protein 1 protein.
Length = 308
Score = 50.0 bits (114), Expect = 8e-06
Identities = 42/139 (30%), Positives = 71/139 (51%)
Frame = +3
Query: 288 LTFQVKYLGQSDARGLWGIKHTRKPVDLMVAAAKALPPGQILPLVKLTITPDGVHLETIN 467
+ F +KYLG + G + + + +VA AKA G+ L V L ++P G+ L +
Sbjct: 46 MLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKA--SGKKLQKVTLKVSPRGIILT--D 101
Query: 468 HGTKQDDFEHMAVFFNIESISYGVQDLVYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
+ T Q E+++++ ISY D ++ +VF+ I A + ECHAF+C R
Sbjct: 102 NLTNQL-IENVSIY----RISYCTADKMHDKVFAYI-----AQSQHNQSLECHAFLCTKR 151
Query: 648 NAARRLTYSLAAAFQELLE 704
A+ +T ++A AF+ E
Sbjct: 152 KMAQAVTLTVAQAFKVAFE 170
>BC029770-1|AAH29770.2| 308|Homo sapiens low density lipoprotein
receptor adaptor protein 1 protein.
Length = 308
Score = 50.0 bits (114), Expect = 8e-06
Identities = 42/139 (30%), Positives = 71/139 (51%)
Frame = +3
Query: 288 LTFQVKYLGQSDARGLWGIKHTRKPVDLMVAAAKALPPGQILPLVKLTITPDGVHLETIN 467
+ F +KYLG + G + + + +VA AKA G+ L V L ++P G+ L +
Sbjct: 46 MLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKA--SGKKLQKVTLKVSPRGIILT--D 101
Query: 468 HGTKQDDFEHMAVFFNIESISYGVQDLVYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
+ T Q E+++++ ISY D ++ +VF+ I A + ECHAF+C R
Sbjct: 102 NLTNQL-IENVSIY----RISYCTADKMHDKVFAYI-----AQSQHNQSLECHAFLCTKR 151
Query: 648 NAARRLTYSLAAAFQELLE 704
A+ +T ++A AF+ E
Sbjct: 152 KMAQAVTLTVAQAFKVAFE 170
>AY389348-1|AAQ90407.1| 308|Homo sapiens LDL receptor adaptor
protein protein.
Length = 308
Score = 50.0 bits (114), Expect = 8e-06
Identities = 42/139 (30%), Positives = 71/139 (51%)
Frame = +3
Query: 288 LTFQVKYLGQSDARGLWGIKHTRKPVDLMVAAAKALPPGQILPLVKLTITPDGVHLETIN 467
+ F +KYLG + G + + + +VA AKA G+ L V L ++P G+ L +
Sbjct: 46 MLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKA--SGKKLQKVTLKVSPRGIILT--D 101
Query: 468 HGTKQDDFEHMAVFFNIESISYGVQDLVYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
+ T Q E+++++ ISY D ++ +VF+ I A + ECHAF+C R
Sbjct: 102 NLTNQL-IENVSIY----RISYCTADKMHDKVFAYI-----AQSQHNQSLECHAFLCTKR 151
Query: 648 NAARRLTYSLAAAFQELLE 704
A+ +T ++A AF+ E
Sbjct: 152 KMAQAVTLTVAQAFKVAFE 170
>AL606491-1|CAI16483.1| 308|Homo sapiens low density lipoprotein
receptor adaptor protein 1 protein.
Length = 308
Score = 50.0 bits (114), Expect = 8e-06
Identities = 42/139 (30%), Positives = 71/139 (51%)
Frame = +3
Query: 288 LTFQVKYLGQSDARGLWGIKHTRKPVDLMVAAAKALPPGQILPLVKLTITPDGVHLETIN 467
+ F +KYLG + G + + + +VA AKA G+ L V L ++P G+ L +
Sbjct: 46 MLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKA--SGKKLQKVTLKVSPRGIILT--D 101
Query: 468 HGTKQDDFEHMAVFFNIESISYGVQDLVYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
+ T Q E+++++ ISY D ++ +VF+ I A + ECHAF+C R
Sbjct: 102 NLTNQL-IENVSIY----RISYCTADKMHDKVFAYI-----AQSQHNQSLECHAFLCTKR 151
Query: 648 NAARRLTYSLAAAFQELLE 704
A+ +T ++A AF+ E
Sbjct: 152 KMAQAVTLTVAQAFKVAFE 170
>AK024397-1|BAB14908.1| 221|Homo sapiens protein ( Homo sapiens
cDNA FLJ14335 fis, clone PLACE4000411, highly similar to
Homo sapiens mRNA; cDNA DKFZp586D0624 (from clone
DKFZp586D0624). ).
Length = 221
Score = 50.0 bits (114), Expect = 8e-06
Identities = 42/139 (30%), Positives = 71/139 (51%)
Frame = +3
Query: 288 LTFQVKYLGQSDARGLWGIKHTRKPVDLMVAAAKALPPGQILPLVKLTITPDGVHLETIN 467
+ F +KYLG + G + + + +VA AKA G+ L V L ++P G+ L +
Sbjct: 1 MLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKA--SGKKLQKVTLKVSPRGIILT--D 56
Query: 468 HGTKQDDFEHMAVFFNIESISYGVQDLVYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
+ T Q E+++++ ISY D ++ +VF+ I A + ECHAF+C R
Sbjct: 57 NLTNQL-IENVSIY----RISYCTADKMHDKVFAYI-----AQSQHNQSLECHAFLCTKR 106
Query: 648 NAARRLTYSLAAAFQELLE 704
A+ +T ++A AF+ E
Sbjct: 107 KMAQAVTLTVAQAFKVAFE 125
>BC040164-1|AAH40164.1| 168|Homo sapiens PID1 protein protein.
Length = 168
Score = 43.2 bits (97), Expect = 0.001
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +3
Query: 297 QVKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINH 470
QV YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 10 QVTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH 68
Query: 471 GTKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 69 --KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESK 123
Query: 648 NAARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 124 LEAKKLAHAMMEAFRK 139
>AY317148-1|AAP79437.1| 250|Homo sapiens NYGGF4 protein.
Length = 250
Score = 41.5 bits (93), Expect = 0.003
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +3
Query: 297 QVKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINH 470
+V YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 92 KVTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH 150
Query: 471 GTKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 151 --KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESK 205
Query: 648 NAARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 206 LEAKKLAHAMMEAFRK 221
>AK125359-1|BAC86145.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ43369 fis, clone NTONG2003852. ).
Length = 248
Score = 41.5 bits (93), Expect = 0.003
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +3
Query: 297 QVKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINH 470
+V YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 90 KVTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH 148
Query: 471 GTKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 149 --KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESK 203
Query: 648 NAARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 204 LEAKKLAHAMMEAFRK 219
>AK000708-1|BAA91333.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ20701 fis, clone KAIA2204. ).
Length = 299
Score = 41.5 bits (93), Expect = 0.003
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +3
Query: 297 QVKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINH 470
+V YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 141 KVTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH 199
Query: 471 GTKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 200 --KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESK 254
Query: 648 NAARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 255 LEAKKLAHAMMEAFRK 270
>AB075874-1|BAD38656.1| 271|Homo sapiens putative protein product
of HMFN2073 protein.
Length = 271
Score = 41.5 bits (93), Expect = 0.003
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Frame = +3
Query: 297 QVKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINH 470
+V YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 113 KVTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH 171
Query: 471 GTKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESR 647
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 172 --KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESK 226
Query: 648 NAARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 227 LEAKKLAHAMMEAFRK 242
>AC007677-1|AAX88839.1| 158|Homo sapiens unknown protein.
Length = 158
Score = 41.1 bits (92), Expect = 0.004
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Frame = +3
Query: 300 VKYLGQSDARGLWGIKH-TRKPVDLMVAAAKALPPGQILPL-VKLTITPDGVHLETINHG 473
V YLG+ G+ + T KPV + + L + P L I P V L ++H
Sbjct: 1 VTYLGKVSTTGMQFLSGCTEKPV-IELWKKHTLAREDVFPANALLEIRPFQVWLHHLDH- 58
Query: 474 TKQDDFEHMAVFFNIESISYGVQDL-VYTRVFSMIIVKDNADIKGLNPFECHAFVCESRN 650
K + HM F + I+Y D V +F+ + + N D+ +CHA CES+
Sbjct: 59 -KGEATVHMDTF-QVARIAYCTADHNVSPNIFAWVYREINDDLS--YQMDCHAVECESKL 114
Query: 651 AARRLTYSLAAAFQE 695
A++L +++ AF++
Sbjct: 115 EAKKLAHAMMEAFRK 129
>Z99127-7|CAI18937.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>BC041888-1|AAH41888.1| 605|Homo sapiens RABGAP1L protein protein.
Length = 605
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 186 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 215
>AL591108-1|CAH70225.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL161671-6|CAI16281.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL157958-1|CAB76100.1| 582|Homo sapiens hypothetical protein
protein.
Length = 582
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL136377-4|CAI22935.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL031286-3|CAI22382.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL031286-2|CAI22381.1| 605|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 605
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 186 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 215
>AL031286-1|CAI22380.1| 582|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 582
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL022400-4|CAI22878.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL022400-3|CAI22877.1| 605|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 605
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 186 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 215
>AL022400-2|CAI22876.1| 582|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 582
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL022171-4|CAI20384.1| 815|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL022171-3|CAI20383.1| 605|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 605
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 186 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 215
>AL022171-2|CAI20382.1| 582|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 582
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>AL021069-2|CAI23486.1| 605|Homo sapiens RAB GTPase activating
protein 1-like protein.
Length = 605
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 186 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 215
>AK095838-1|BAC04635.1| 815|Homo sapiens protein ( Homo sapiens
cDNA FLJ38519 fis, clone HCHON2000751, moderately
similar to Rab6 GTPase activating protein. ).
Length = 815
Score = 31.1 bits (67), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 603 GLNPFECHAFVCESRNAARRLTYSLAAAFQ 692
G F+ H F CE + A R+ YS AF+
Sbjct: 223 GSEEFQIHVFSCEIKEAVSRILYSFCTAFK 252
>BC054492-1|AAH54492.1| 997|Homo sapiens RABGAP1 protein protein.
Length = 997
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 171 FRIHVFRCEIQEAVSRILYSFATAFR 196
>BC020609-1|AAH20609.1| 472|Homo sapiens Unknown (protein for
IMAGE:4768130) protein.
Length = 472
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 243 FRIHVFRCEIQEAVSRILYSFATAFR 268
>AL365338-3|CAH70298.1| 997|Homo sapiens RAB GTPase activating
protein 1 protein.
Length = 997
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 171 FRIHVFRCEIQEAVSRILYSFATAFR 196
>AK131449-1|BAD18594.1| 599|Homo sapiens d) (GAPCENA). protein.
Length = 599
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 175 FRIHVFRCEIQEAVSRILYSFATAFR 200
>AJ011679-1|CAB40267.2| 997|Homo sapiens Rab6 GTPase activating
protein, GAPCenA protein.
Length = 997
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 171 FRIHVFRCEIQEAVSRILYSFATAFR 196
>AF161357-1|AAF28917.1| 308|Homo sapiens HSPC094 protein.
Length = 308
Score = 29.9 bits (64), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 615 FECHAFVCESRNAARRLTYSLAAAFQ 692
F H F CE + A R+ YS A AF+
Sbjct: 74 FRIHVFRCEIQEAVSRILYSFATAFR 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,419,975
Number of Sequences: 237096
Number of extensions: 2304604
Number of successful extensions: 5426
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 5183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5426
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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