Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26m09
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 32 0.42
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 32 0.42
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 29 2.2
09_04_0278 + 16333261-16334172,16334900-16335532 29 3.9
10_08_1057 + 22594419-22594466,22594710-22594776,22595053-225952... 28 5.2
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290... 28 6.8
12_02_1255 + 27360958-27362682 27 9.0
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983... 27 9.0
06_03_0588 + 22567820-22570802,22570917-22571269 27 9.0
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 231 TASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYK 383
+A YL + +Q IGL + + V L+ L + G ++DRFG +K
Sbjct: 36 SACWFTYLLLFLQEIGLAPRDAAIVMLSGQVADGLMTILAGEMIDRFGHFK 86
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 243 LPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVD----RFGEYKPVVITALIL 410
L LT ++Q++G+ SF++L P T F+ P G D ++G +P ++ ++
Sbjct: 80 LSLLTPYIQTLGIDHAMASFIWLCGPITGFVVQPCVGVWSDKCRSKYGRRRPFILAGCLM 139
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 249 YLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYK 383
YL + + IGL+ + + V L+ + G L+DRFG +K
Sbjct: 39 YLLVFLTDIGLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFK 83
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 119 GRVQRRGTRPHREVHGLDAHQSELNYVKSDSF 214
G + GT PHR +H L L Y++ SF
Sbjct: 46 GNLNLVGTLPHRSIHNLSKKYGPLMYLRFGSF 77
>10_08_1057 +
22594419-22594466,22594710-22594776,22595053-22595270,
22595425-22595981,22596398-22597217
Length = 569
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 TTFLSPPITGFLVDRF-GEYKPVVITAL 404
TTFL+P + FL D + G+YK + I+ +
Sbjct: 80 TTFLTPVLGAFLADTYWGKYKTIAISTV 107
>08_01_0322 -
2898272-2898475,2898548-2898730,2898817-2899702,
2902070-2902374
Length = 525
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 462 GVMPSAYVMRHPITNSVE--IWWSPCPSREC 548
GV S R I NSV+ +WWS CP C
Sbjct: 8 GVHLSVIHARVLIQNSVKASVWWSHCPPHRC 38
>12_02_1255 + 27360958-27362682
Length = 574
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = +3
Query: 177 INPNLIMLKVTLFVMYGATASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGF 356
++ ++++L G T + + + +S+G I+ + + +L GF
Sbjct: 334 VSVDMVLLFTATVFGVGGTLTAIDNMGQIGESLGYPQRSIATLVSLISIWNYLGRVSAGF 393
Query: 357 ----LVDRFGEYKPVVITALILNAAFHHSLLLIPHQETPGVMPSAYVM 488
L+ R+G +PVV+T ++L H L+ PG + +A V+
Sbjct: 394 ASDALLSRYGISRPVVVTGVLLLTVAGHLLVAF---GVPGSLYAASVL 438
>06_03_0956 +
26296744-26297382,26297595-26297669,26298147-26298341,
26298426-26298559,26298713-26298779,26298985-26299043,
26299204-26299321,26299613-26299726,26299855-26299986,
26300076-26300492,26300904-26300954,26301303-26301373,
26302067-26302151,26302258-26302410,26302522-26302596,
26302755-26302844,26303953-26304000,26304081-26304195,
26305356-26305459,26305582-26305692
Length = 950
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 392 DNGSYFERRIPSFFTSDTSPGDAWCYAIGIRNETPDHEQCRDLVEPL 532
D ++ E ++P F S T+P D C+ + + C DL + L
Sbjct: 588 DKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDAL 634
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/121 (20%), Positives = 48/121 (39%)
Frame = +3
Query: 72 AKSIEDKKTSEDNTNMDGYSDEELGRIGRFMVWMRINPNLIMLKVTLFVMYGATASLLPY 251
A S++ K ++ + G LG + + I NL+ +F L
Sbjct: 266 AISLQMKYLDLEDNHFTGTIPSSLGNLSSLIYLSLIANNLVGTIPDIF----DHVPTLQT 321
Query: 252 LTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYKPVVITALILNAAFHHS 431
L +++ ++ VP F +L + + +TG L + G P + ++LN F S
Sbjct: 322 LAVNLNNLSGPVPPSIFNISSLAYLGMANNSLTGRLPSKIGHMLPNIQELILLNNKFSGS 381
Query: 432 L 434
+
Sbjct: 382 I 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,969
Number of Sequences: 37544
Number of extensions: 329150
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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