Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26m08
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    70   3e-13
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   6.9  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.9  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
 Frame = +3

Query: 249 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 425
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 426 GENAVLDFKNMNTK---YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFK 596
            E + +  K+  +    + F +  N  +G  N T TL W + P  G L      G +   
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEG-KNATYTLHWTVSPKMGFLSWGAGPGSYEIP 176

Query: 597 FPIEYTQTR 623
           F    TQ +
Sbjct: 177 FHKIITQPK 185


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 540 IPNAGLLPNIQALGQHSFKFP-IEYTQTRV 626
           IP A L+P  + L   S++FP ++Y+QT +
Sbjct: 63  IPRAWLIPFHEFLNNRSYRFPKLDYSQTPI 92


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 EHLGNEMILAS*LSILKQICPTSLTGTLNSCSYISLPNTLHQ 378
           E LGN+ I A+   ++K++C  S   T N C  +S  + + Q
Sbjct: 171 EKLGNKSIEANRSPLIKELC-ESANSTENVCFSVSTVDEIQQ 211


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 444 DFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQAL 578
           D +  +TK++     +GL    +  L LSW  + N   L  I+ L
Sbjct: 462 DSEEKSTKWFLQQIDHGLFPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 607 SIGNLKEC*PRAWMLGNKPALGIIFHDN 524
           S+GNLKE   R + L NK  + I   DN
Sbjct: 435 SLGNLKERYVRQYFLSNKKRIAIYELDN 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,020
Number of Sequences: 5004
Number of extensions: 48009
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)