Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26l20
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    24   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.8  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 402 NFKDPKIILINFFAHIFERNLFC*CKFVIFKTKYISFFQSNHKSSMY 542
           NF     ILIN+F  ++  +L    +F I   K +   +  ++ S Y
Sbjct: 10  NFPSTSFILINYFIFLYFNSLVRFRRFTIELDKVLESPRGKYEFSKY 56


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 129 FCKMGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVN 248
           FC + N+K K ++I   +     T +     +KT +S+ +
Sbjct: 203 FCNLENVKLKELRIILEDIKHINTRHNTKNGMKTLLSETD 242


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 105 SLFNN-ITVLINFDKY 61
           SLF N + + INFDKY
Sbjct: 164 SLFENGVEIGINFDKY 179


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 99 FNNITVLINFDKY 61
          FNN+   INFD++
Sbjct: 3  FNNVIKYINFDRF 15


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 192 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 323
           E+ +NE+ + L+   S    S+  + E R+  +EN  + +   S
Sbjct: 253 EKLHNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETS 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,251
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)