Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26l17
(206 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 23 0.29
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 0.38
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 20 2.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 20 2.7
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 20 2.7
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 20 2.7
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 2.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 20 2.7
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 20 3.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 4.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 4.7
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 19 8.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 19 8.2
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 23.4 bits (48), Expect = 0.29
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 26 YSISYFHYVSFIYEFS 73
Y I YFH +S I EFS
Sbjct: 252 YKILYFHAMSSIAEFS 267
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 23.0 bits (47), Expect = 0.38
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 124 ICTSLDNINKDNKLY 80
IC + NI KDNK Y
Sbjct: 97 ICEGVMNIQKDNKSY 111
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 20.2 bits (40), Expect = 2.7
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +2
Query: 20 ITYSISYFHYVSFIY 64
IT+ ++YF +++F +
Sbjct: 468 ITFPVAYFMFLTFFF 482
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 20.2 bits (40), Expect = 2.7
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +2
Query: 20 ITYSISYFHYVSFIY 64
IT+ ++YF +++F +
Sbjct: 454 ITFPVAYFMFLTFFF 468
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 20.2 bits (40), Expect = 2.7
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +2
Query: 20 ITYSISYFHYVSFIY 64
IT+ ++YF +++F +
Sbjct: 488 ITFPVAYFMFLTFFF 502
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 20.2 bits (40), Expect = 2.7
Identities = 5/15 (33%), Positives = 12/15 (80%)
Frame = +2
Query: 20 ITYSISYFHYVSFIY 64
IT+ ++YF +++F +
Sbjct: 437 ITFPVAYFMFLTFFF 451
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 20.2 bits (40), Expect = 2.7
Identities = 5/15 (33%), Positives = 10/15 (66%)
Frame = +1
Query: 19 HYVFHFLLPLCVFYL 63
+Y+FH +P C+ +
Sbjct: 246 YYLFHTYIPTCLIVI 260
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 20.2 bits (40), Expect = 2.7
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -2
Query: 70 EFIDKRHIMEVGNG 29
E++D+ HI+E+ G
Sbjct: 506 EYVDQDHIIEIYRG 519
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.8 bits (39), Expect = 3.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 87 LLSLFILSNDVHI*FNLIYICIFISLTFLISPLRI 191
L LF+ S +V L ++ + + L F PLR+
Sbjct: 117 LAQLFLKSTEVTPRDGLGWLLLMLYLLFATLPLRL 151
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 180 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 214
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic
acetylcholine receptor alpha6subunit protein.
Length = 529
Score = 19.4 bits (38), Expect = 4.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 35 SYFHYVSFIYE 67
+YFH+ IYE
Sbjct: 38 TYFHHTYIIYE 48
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 248 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic
acetylcholine receptor alpha6subunit protein.
Length = 529
Score = 19.4 bits (38), Expect = 4.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +2
Query: 35 SYFHYVSFIYE 67
+YFH+ IYE
Sbjct: 38 TYFHHTYIIYE 48
Score = 19.4 bits (38), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 72 PNVYSLLSLFILSNDVHI*FNLIYICIFISLTFLI 176
P V ++ I ++ FNLI C+ IS L+
Sbjct: 248 PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALL 282
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 18.6 bits (36), Expect = 8.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 158 YEDTYINKIK 129
Y+ TYI K+K
Sbjct: 321 YDSTYIPKVK 330
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 18.6 bits (36), Expect = 8.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 129 FNLIYICIFISLTFLI 176
FNLI CI I+ L+
Sbjct: 218 FNLILPCILINSVALL 233
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,046
Number of Sequences: 438
Number of extensions: 675
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 2912559
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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