Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26l16
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.8  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 FAVHKWYALILDAKSHHNGIKERI 624
           F   K+Y  I+DA  H + IK  I
Sbjct: 7   FETSKYYVTIIDAPGHRDFIKNMI 30


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 FAVHKWYALILDAKSHHNGIKERI 624
           F   K+Y  I+DA  H + IK  I
Sbjct: 23  FETSKYYVTIIDAPGHRDFIKNMI 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 FAVHKWYALILDAKSHHNGIKERI 624
           F   K+Y  I+DA  H + IK  I
Sbjct: 80  FETSKYYVTIIDAPGHRDFIKNMI 103


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 FAVHKWYALILDAKSHHNGIKERI 624
           F   K+Y  I+DA  H + IK  I
Sbjct: 80  FETAKYYVTIIDAPGHRDFIKNMI 103


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 257 PVEINIKFLGNCICVISLAT 198
           P E+  K LGNC+ V  + T
Sbjct: 21  PAELTAKLLGNCVRVSPVIT 40


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 457 AKESKYNNAQKKDFIFQAYEIICKHLNNNENNFAVHKWY 573
           +KE K  ++   ++ +  Y     + NNN NN+    +Y
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,050
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)