Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26l06
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    35   0.013
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    28   1.5  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   5.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.9  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   5.9  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   5.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   7.8  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 437 KHDITFAYDATVLELKAHLERICGVPQSAQKLIIK-GMARDEMTLRKAGIVKGGKVMLVG 613
           K+D+    + T   LK  L  +  VP   QK+I+K G  +D++ L   GI     ++++G
Sbjct: 12  KYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLMMG 71

Query: 614 SKMD-----DILAVKSVPKEILEE 670
           +  +      I AV+SV +E  E+
Sbjct: 72  TAGELPTAMPIPAVESVEQEESED 95


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 293 MDKPVVNEKILQIDPPAECSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATV 472
           MDKP+  ++  ++D   E   G+      S    +  +V     FN++KHD+  ++  TV
Sbjct: 43  MDKPLTADEAFELDRKVELPNGSIHKRLPSW---LKTKVPLGTNFNRIKHDLRGSHLHTV 99

Query: 473 LE 478
            E
Sbjct: 100 CE 101


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 633 NMSSILDPTSITFPPLTIPAFLSVISSRAIPL 538
           N S++L PTS +F   T+ A  +  S+  IP+
Sbjct: 620 NSSTLLSPTSTSFTSYTVSATATPTSTSHIPI 651


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 438 FTLLKTTV--NSTCSGISQTSLSSVVSDVPAEHSAGGSICNIFSL 310
           F L K +V  NS    + ++ L+S+ ++ P E   GGS+ ++ +L
Sbjct: 10  FGLSKKSVSTNSAKGSLPRSPLASIQTNQPVEEGEGGSLPSVSNL 54


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 675 AFSSKISFGTLFTANMSSILDPTSITFPPLTIPAFLSVISSRAIPLMINF*ADCGTP 505
           A +S +S  T  +A M+S   PT++     T P   + +SS +I +  N  A+  TP
Sbjct: 205 ASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNSTP 261


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 339 GGSICNIFSLTTGLSMILVAPFDTEFG 259
           GG IC+ F ++T    IL+  F   FG
Sbjct: 375 GGGICDYFGISTDHVDILMGTFTKSFG 401


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 690 LVWVVAFSSKISFGTLFTANMSSILDPTSI 601
           L  +VA +  +SFG+L + N+ ++ D TSI
Sbjct: 251 LYLLVAITGYLSFGSLASGNIIAMYDNTSI 280


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 584 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATT 682
           V G  ++LVG+ +DDI  ++   +  LE+K  T
Sbjct: 47  VPGSLLLLVGANVDDIELIQHEMESHLEKKLIT 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,274
Number of Sequences: 5004
Number of extensions: 51454
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)