Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26l05
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   5.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   5.5  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   5.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   9.6  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.6  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 55   IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 195
            I+  Y L ++  DI  +  + K  ++EL +   S   + NQ + DF+
Sbjct: 1201 IFQAYLLKEMPNDIVSQFEMLKSKQIELTVQMASYEGDLNQNLCDFL 1247


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 79  DLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDV 231
           D    +   IAL + + V  GI+ K+T +ERN+ I  F +K++      D+
Sbjct: 487 DKGLKLPPAIALVQSVVVPCGITNKTTDQERNE-IEGFCSKLADRLNAADI 536


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 82  LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQT 222
           LN DI +        +V+  +   +++EE+N    +FVT IS   QT
Sbjct: 374 LNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQT 420


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 550 DSEASETALPASDAEKSETNTVSLWNDDVTPSKNV 654
           DSE++   LP  D+   +     LWN D    K+V
Sbjct: 182 DSESTPILLPLIDSLNHKPKQPILWNSDFQDEKSV 216


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 138
           D N      I +    NGY LT    D+ KK +++ +L + L
Sbjct: 233 DGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLIL 274


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 388 YLVQAALNALTGFYAKPKSSEGWI-NDVIP 474
           ++V+  +  LT FY + KS E W+ ND IP
Sbjct: 115 FIVKDLVPDLTYFYKQYKSIEPWLQNDNIP 144


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 322 DELNKITNPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVIP 474
           D L + T P ++ +   ++EK+YL  A+    TG   +  S     + +IP
Sbjct: 58  DFLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.129    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,497
Number of Sequences: 5004
Number of extensions: 37591
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)