Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26k23
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    32   0.031
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.29 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   0.51 
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   2.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.7  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   6.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.2  

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 32.3 bits (70), Expect = 0.031
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 13  STKSDRCLIEIKINSFVNKY*SVKMNFDL*IKLMTEFGKNYRKNKLFS 156
           S K  +C+++ K N+ VNK    ++N+ L  K +T F K  ++N+  S
Sbjct: 177 SEKPGKCILKDKTNAHVNKIPQDEVNYSLPQKNITIFSKELKENEFES 224


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 136 RKNKLFSFYL*GRIIGDHNAIECHNLGSDSIMHPADVVDWSTLP 267
           +K K F  Y    ++    A    NL + S  HPA   +W TLP
Sbjct: 279 KKGKFFEAYAVDAVLCYTVAFHLQNLSNLSRNHPATTSNWRTLP 322


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 243 ISRMHDAITTQIMTFDRIVVSDYTSLQIKRK*LIFTIIFTKFRH*FN 103
           +SR  + +   ++  D+    DYTSL+  RK  +F  +   F H F+
Sbjct: 103 VSRYSETLDKGLLNGDKTTKGDYTSLRRFRKPFLFDKLSPYFTHFFS 149



 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 206  IIWVVIASCILLMWLIGRLYHELLYAYEQSSTLTNIE 316
            I W +I+  I +   I  ++    Y + +SS+ TN++
Sbjct: 1487 IAWNIISMYIFVNMFITVVFDNFSYIHTKSSSFTNLQ 1523


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  MNFDL*IKLMTEFGKNYRKNK 147
           M+ D  I ++ +FG+NY KNK
Sbjct: 1   MSLDKQIPIIYDFGENYEKNK 21


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -2

Query: 351  VTFNSSRNNHEYSIFVSVLDCS*AYRSSW*SRPINHISRMHDAITTQIMTFDRIVVSDY 175
            +T NS+ N    +    +LD   A  ++  + P+  I  + +++ TQ+++    +V DY
Sbjct: 2654 LTLNSAVNYIPQAHASLILDQFNAILTTIFNNPLQQIEILENSLPTQLLSIKPAIVGDY 2712


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 194 RSNVIIWVVIA---SCILLMWLIGRLYHE 271
           +S + +W ++     CI L W I + YHE
Sbjct: 21  KSYLEVWPLVTVPRQCICLRWCISKEYHE 49


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/73 (19%), Positives = 35/73 (47%)
 Frame = -2

Query: 258  RPINHISRMHDAITTQIMTFDRIVVSDYTSLQIKRK*LIFTIIFTKFRH*FNSQIKIHFH 79
            +P++ IS      +T+ + F++++VSD   + ++      T +         + ++  F+
Sbjct: 1405 KPVHWISLFEITKSTEQLDFEKLLVSDILGIDLQAHESFITTLLNSAV--VEANLENQFN 1462

Query: 78   *LIFIYKRIYFNF 40
             +   +K  YF+F
Sbjct: 1463 EVHSFWKNSYFSF 1475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,435
Number of Sequences: 5004
Number of extensions: 33212
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)