Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26k19
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.9  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   6.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 99   SYITIVYKKQLDPWDIRQNRYLNCVREKSIFE 4
            +++T     + D W I QN   N +R  S+FE
Sbjct: 1125 TFVTESNTTEFDDWSILQNTAANLLRLISMFE 1156


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 246  VFEKNRFSKLV-QAL*ISLYQPSDVSSYILQTITR*IVSRSRMNQTTE*ASYITIVYKKQ 70
            ++ +NR  KL+ +   ++ Y  +   +  L T    I  R  M    E    IT+  K  
Sbjct: 955  LWRRNRNEKLIYRTRPLAEYSTNGRWNQQLMTFNNTIAPRKLMFHQFE-DQLITLGDKDI 1013

Query: 69   LDPWDIRQNRYLN 31
            +  WD R+NR LN
Sbjct: 1014 IQVWDWRRNRCLN 1026


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 129  FY*QFTWL*FVKCSLIHLTVGIAIST 206
            FY  F WL  +  +L + T+GI I+T
Sbjct: 1204 FYGGFAWLMLMIFTLYYTTLGIGIAT 1229


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 159 QTITR*IVSRS--RMNQTTE*ASYITIVYKKQLDPWDIRQNRYLNCVRE 19
           +T+T  ++ RS  +++Q +E   Y  +V+KK  D +  +       +RE
Sbjct: 207 ETLTDLVIPRSAKKLDQDSEFVLYTVVVFKKTADSFITKAREAKYTIRE 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,707
Number of Sequences: 5004
Number of extensions: 33950
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)