Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26k07
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 184 9e-48
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 144 9e-36
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 137 1e-33
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 133 2e-32
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 119 3e-28
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 118 9e-28
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 113 2e-26
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 106 2e-24
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 81 9e-17
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 79 6e-16
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 76 5e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 7e-14
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 71 2e-13
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 68 1e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 67 2e-12
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 65 6e-12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 60 2e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 53 3e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 46 4e-06
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 42 7e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 36 0.006
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 0.91
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 1.6
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.8
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 6.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 6.4
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 6.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.4
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 8.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 8.5
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 25 8.5
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.5
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 184 bits (448), Expect = 9e-48
Identities = 98/144 (68%), Positives = 112/144 (77%), Gaps = 3/144 (2%)
Frame = +1
Query: 175 NGAPQTKVC-QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD-TT 348
N AP+ V KLVLLG+SAVGKSSLVLRFVK QF +Y+ESTIGAAFLTQ + D+ T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 349 VKFEIWDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVI 528
VK EIWDTAGQERY SLAPMYYR A AIVVYDIT + +AK+W+KELQRQA IVI
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 529 ALAGNKSDLA-AKRMVEFEEAQAY 597
ALAGNK DLA +R VE +A+AY
Sbjct: 124 ALAGNKLDLAQERRAVEKADAEAY 147
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 144 bits (349), Expect = 9e-36
Identities = 67/131 (51%), Positives = 90/131 (68%)
Frame = +1
Query: 205 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 384
FK VL+G+S VGKS+L++RF + +F+ +STIG F T+ I D+ +K +IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 385 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 564
RY ++ YYRGA A++VYDIT Q +F W+KEL+ A +IVI L GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHL 130
Query: 565 RMVEFEEAQAY 597
R V EEAQA+
Sbjct: 131 RAVSTEEAQAF 141
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 137 bits (331), Expect = 1e-33
Identities = 60/130 (46%), Positives = 90/130 (69%)
Frame = +1
Query: 202 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 381
+FKLV LGE +VGK+SL+ RF+ QF ++TIG FL++ + +D TV+ ++WDTAGQ
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 382 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAA 561
ER+ SL P Y R + AI+VYDITN ++F + W+++++ + ++I L GNK+DLA
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD 130
Query: 562 KRMVEFEEAQ 591
KR V EE +
Sbjct: 131 KRQVTQEEGE 140
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 133 bits (322), Expect = 2e-32
Identities = 60/131 (45%), Positives = 85/131 (64%)
Frame = +1
Query: 205 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 384
FKL+L+G+S VGKS L+LRF + E STIG F + + TVK +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 385 RYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAK 564
R+ ++ YYRGA I+VYD+T+QD+F K W++E+ R A + L GNKSD+ K
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 565 RMVEFEEAQAY 597
++VE+ A+ +
Sbjct: 129 KVVEYSVAKEF 139
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 119 bits (287), Expect = 3e-28
Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 4/134 (2%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRF----DDTTVKFEIWDTA 375
K+VL G S GKS L+ RFVK Q+ + T+G F ++ I +K +IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 376 GQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDL 555
GQE++ S+A YYRGA A++VYD+TN+D+F +W+ +++ A +I + LAG+KSDL
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDL 130
Query: 556 AAKRMVEFEEAQAY 597
+R V EEA +
Sbjct: 131 QNQRQVSTEEAAEF 144
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 118 bits (283), Expect = 9e-28
Identities = 53/129 (41%), Positives = 80/129 (62%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
KL+L+G+S VGKS L+LRF + F +TIG F + I D +K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSDLAAKR 567
+ ++ YYRGA +++YD+T++ +F + W +++ AS ++ L GNK D +R
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQR 130
Query: 568 MVEFEEAQA 594
V FE+ QA
Sbjct: 131 QVSFEQGQA 139
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 113 bits (271), Expect = 2e-26
Identities = 58/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
K+++LGES VGK+S++ ++V +F + ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPS----IVIALAGNKSDL 555
+ SL +YRGA ++VYD+ N +F +W E QASPS L GNK D+
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
Query: 556 -AAKRMVEFEEAQAY 597
KRMV +A A+
Sbjct: 130 EEQKRMVSKSKALAF 144
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 106 bits (255), Expect = 2e-24
Identities = 54/134 (40%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
K+V+LG+S VGK+ L+ +FV +F ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASP---SIVIALAGNKSDL- 555
+ SL +YRGA ++VY++ N +F +NW +E Q S + + GN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 556 AAKRMVEFEEAQAY 597
A+KR V A Y
Sbjct: 130 ASKRAVSLHRALDY 143
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 81.4 bits (192), Expect = 9e-17
Identities = 43/129 (33%), Positives = 71/129 (55%)
Frame = +1
Query: 184 PQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEI 363
PQ V FKLVL+G+ GK++ V R + G+F + +T+G + + F +
Sbjct: 4 PQN-VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNV 62
Query: 364 WDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGN 543
WDTAGQE+ L YY Q I+++D+T++ T+ +W ++L R +I I L GN
Sbjct: 63 WDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGN 121
Query: 544 KSDLAAKRM 570
K D+ +++
Sbjct: 122 KVDVKERKV 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 78.6 bits (185), Expect = 6e-16
Identities = 35/115 (30%), Positives = 65/115 (56%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
K+ ++G+S++GK+SL++ +V+G F E T+G F+ + I +T + F IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQRQASPSIVIALAGNKSD 552
+ ++ PM A + + ++D++ + T K W ++ R + + V L G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQ-ARGFNKTAVPILIGTKYD 125
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 75.8 bits (178), Expect = 5e-15
Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +1
Query: 190 TKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWD 369
T + ++KLV++G+ VGKS+L ++ ++ F + + TI ++ + D ++ D
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLD 62
Query: 370 TAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKELQR-QASPSIVIALAGNK 546
TAGQE Y ++ Y R + ++VY+IT++ +F + +++ R + + + L NK
Sbjct: 63 TAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANK 122
Query: 547 SDLAAKRMVEFEEAQ 591
DL A+R+V E +
Sbjct: 123 CDLEAERVVSRAEGE 137
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 71.7 bits (168), Expect = 7e-14
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 187 QTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIW 366
Q++ + KLV++G+ A GK+SL+ F G F T+ +++ R D +V+ +W
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALW 61
Query: 367 DTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGN 543
DTAGQE Y L PM Y A +V + I + D+ + W++E+ P++ L G
Sbjct: 62 DTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI-NTLCPNVPFILVGM 120
Query: 544 KSDL 555
K+DL
Sbjct: 121 KADL 124
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 70.5 bits (165), Expect = 2e-13
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
++ +LG +VGKSSL +++V+ F E TI F ++ I++ EI DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK-NWVKELQRQASPSIVIALAGNKSDLAAK 564
Y L + G ++VY IT++ +F K K L + + I + GNKSDL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 565 RMVEFEEAQA 594
R V EE +A
Sbjct: 127 RAVTAEEGKA 136
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 67.7 bits (158), Expect = 1e-12
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
K+V+LG+ A GK+SL+ F KG F + E TI ++ I D +++ +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 555
Y L + Y ++ + + ++D+ W+ E+ P + + L K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNC-PGVKLVLVALKCDL 129
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 67.3 bits (157), Expect = 2e-12
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
KLV++G+ A GK+ L++ F KG F E T+ ++ + D V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 555
Y L P+ Y + ++ + + + D+ + W+ E+ S S+ I L K+DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCS-SLPILLVACKADL 122
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 65.3 bits (152), Expect = 6e-12
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
KLV++G+ A GK+ L++ F KG F E T+ ++ + D ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRA-KNWVKELQRQASPSIVIALAGNKSDL 555
Y L P+ Y + ++ + + ++ + W+ E+ S ++ I L G K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-NLPILLVGCKVDL 122
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 60.5 bits (140), Expect = 2e-10
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTV-KFEIWDTAGQE 384
KLV++G+ GK+ L++ F G F E T+ ++T ++ V + +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 385 RYHSLAPMYYRGAQSAIVVYDITNQDTFGR-AKNWVKELQRQASPSIVIALAGNKSDLAA 561
Y L P+ Y + ++ + I + + W E+Q P I L G K+DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQ-HFCPRTPIVLVGLKADLRK 134
Query: 562 KR 567
R
Sbjct: 135 DR 136
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 387
K V++G+ AVGK+ L++ + +F T+ + + D ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 388 YHSLAPMYYRGAQSAIVVYDITNQDTFGRAK-NWVKELQRQASPSIVIALAGNKSDL 555
Y L P+ Y +V + +T+ +F K W E+ P + + G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC-PGVPCLIVGTQIDL 119
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.0 bits (104), Expect = 4e-06
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +1
Query: 202 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 381
+ ++++LG A GK++++ + Q T+G F + + + + +KF +WD GQ
Sbjct: 21 EMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVG--FNVETVTYKN--IKFNVWDVGGQ 75
Query: 382 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSDL 555
++ L Y+ G + I V D + + A+ + + R+ +++ LA NK DL
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLA-NKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.9 bits (94), Expect = 7e-05
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 202 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 381
+ +++++G A GK++++ + G+ TIG F + + + + + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYRN--ISFTVWDVGGQ 71
Query: 382 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKE-LQRQASPSIVIALAGNKSDL 555
++ L Y++ Q I V D +++ A ++ L ++ + NK DL
Sbjct: 72 DKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Frame = +1
Query: 202 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 381
+ +++LLG GK++++ + +E T G T + ++F IWD GQ
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFGFQIRTLEVE----GLRFTIWDIGGQ 70
Query: 382 ERYHSLAPMYYRGAQSAIVVYDITNQDTFGRAKNWVKEL--QRQASPSIVIALAGNKSDL 555
+ + Y+ ++ I V D + +N ++EL + + + ++ LA NKSD+
Sbjct: 71 KTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLA-NKSDV 129
Query: 556 A 558
+
Sbjct: 130 S 130
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 0.91
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +1
Query: 208 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ--AIRFDDTTVKFEIWDTAGQ 381
K++L+G S GKSS+ V + +GA + +RF V +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 382 ERY-----HSLAPMYYRGAQSAIVVYDITNQD 462
E + + +R Q I V+D+ +++
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 538 PPERSLSTERPAVGVPSPSSWRDRM 464
P L+ R ++G PSPS+W +R+
Sbjct: 370 PKAEYLNQSRASMGNPSPSNWNNRL 394
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 272 PLTNRSTSEDLPTADSPNNTSLN 204
P N TS+DL DSPN + +N
Sbjct: 376 PSENSDTSDDLTKVDSPNKSLVN 398
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 211 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT----VKFEIWDTAG 378
+V+ GE+ GKS+ V++F+ + E + TQ R + V FE T G
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVG 655
Query: 379 QERYHSL 399
+E +S+
Sbjct: 656 KEVGYSV 662
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 317 RNAAPMVLSWYSWNCPLT-NRSTSEDLPTADSPNNTSL 207
++ A V+ +W CPLT N +T + L ++P++ SL
Sbjct: 109 KSGAVRVIPPDNWKCPLTINTTTFKFLTRKNNPSSMSL 146
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 135 GYGDKQDRSRTEAQWRSTDKSLPVQAG 215
G GDK+ RS T++ W S KS+ +G
Sbjct: 13 GEGDKRLRSTTKSTWLSFLKSIATFSG 39
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 284 SWNCPLTNRSTSEDLPTADS 225
S N P N T EDLPT D+
Sbjct: 263 SENVPKPNAETQEDLPTIDA 282
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 570 HALGCEVALVARQSDHYRRRGLPLEFLHPVLGATECVLISYIIYYNSRLGS 418
H GC V A + H R+ + E L +L T+ +Y++ + R GS
Sbjct: 552 HPYGCRVIQRAIEHCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGS 602
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 368 SQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNTSLN 204
S +S+ T ++ +R A +N L++ S P ++ STS S N TS+N
Sbjct: 225 SSVSS-TYLTQDREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 360 DLGYSWTGEVSQLSADVLQRSPICYCSI 443
D G S G+V L+ +R PI YC +
Sbjct: 149 DKGVSAMGQVISLNVRHSERRPIIYCDV 176
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 239 PTADSPNNTSLNWQTFVCGAPLGLCAAPVLFVAIS 135
P+ +P +NW V GAP+ A +++ AIS
Sbjct: 486 PSVKNPTPAEMNWTCLVFGAPM---LAVLIWYAIS 517
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 103 SRIVFLLVC*LDMATNRTGAAQRPNGAPQTKV 198
S + FLL C L+M R A N PQT V
Sbjct: 331 SAVQFLLKCPLEMVLRRAQAQYECNLPPQTIV 362
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 371 VSQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNT 213
+S L +S +A R VLS+ N P+ S+SE T + NN+
Sbjct: 65 LSSSKTLAELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAF-TIEKDNNS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,946
Number of Sequences: 5004
Number of extensions: 53959
Number of successful extensions: 202
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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