Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26k07
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -1

Query: 275 CPLTNRSTSEDLPTAD---SPNNTS-LNWQTF--VCGAPLGLCAAPVLFVAISN*QTNKN 114
           C +T   T +     D   + NN + +NW+        PLG  A   +FVA    +T KN
Sbjct: 105 CTVTMHGTVQSYDKYDLLENVNNAARINWEYLDKYKPTPLGAVATEKMFVARHLAETPKN 164

Query: 113 T 111
           T
Sbjct: 165 T 165


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 293 SWYSWNCPLTNRSTSEDL 240
           S+YS + P  NRS  EDL
Sbjct: 21  SFYSASYPPQNRSQEEDL 38


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 120 VGLLVGYGDKQDRSRTEAQWRSTDKSLPV 206
           +  L   G K  R+ TEA W S +  + V
Sbjct: 137 ISTLYALGAKIIRTPTEASWHSPEAHISV 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,037
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)