Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26k06
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    32   0.19 
04_03_0613 + 18034727-18036175                                         28   4.0  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   5.3  
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656...    27   9.3  

>01_05_0801 + 25353708-25353914,25354307-25354429,25355035-25355205,
            25355303-25355392,25355497-25355583,25355664-25355719,
            25355812-25355905,25356032-25356144,25356211-25356283,
            25356603-25356683,25356865-25356951,25357031-25357135,
            25357279-25357385,25357481-25357541,25357931-25358158,
            25359720-25360677,25360816-25360997,25361237-25361326,
            25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 130  MTVEKKQNTSSLEHLYNDFDQWISDYN-DIHNIQSALQKHRQK---ENTQFTTTVENKRL 297
            + V   + T+SLE +    +Q +  YN +I  +Q   Q+H QK   EN +  + +E+K  
Sbjct: 853  LEVTYNERTTSLEKMMGQREQLLQKYNEEIRKMQQLAQRHSQKIIDENQKLRSELESKMS 912

Query: 298  QI 303
            ++
Sbjct: 913  EL 914


>04_03_0613 + 18034727-18036175
          Length = 482

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 346 NRNHINTDGLFNGRSSRNGLSDFRLKY 426
           N NHI+  GLF   SS N L+D  L +
Sbjct: 78  NGNHIDNQGLFVLSSSCNSLNDLTLSF 104


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 118  SYVNMTVEKKQNTSSLEHL-YNDFDQWISDYNDIHNIQSALQKHRQKENTQFTTTVENKR 294
            ++ N + E ++   + E   +NDF +++ + +   ++      H Q E+ +   T  N  
Sbjct: 2226 THENTSTEPREVEDTKEKKGFNDFPEFVVETSKQDDVDQDFSIHHQVEDEKSAETENNSA 2285

Query: 295  LQIILNNDIALILYRTKNRNHINT 366
                +   + + +  T N N+++T
Sbjct: 2286 ESEAVQPKLDITIAETNNDNNLST 2309


>01_06_0852 +
           32463784-32463834,32463957-32464628,32465515-32465627,
           32465999-32466261,32466803-32466924,32467176-32467253,
           32467353-32467409,32467590-32467658,32467903-32467947,
           32468303-32468398
          Length = 521

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = +1

Query: 184 FDQWISDYNDIHNIQSALQKHRQK----ENTQFTTTVENK---RLQIILNNDIAL 327
           + +W+  Y +    + A+QKH ++    ENTQ  T  +++     +I++  D+ +
Sbjct: 296 YSEWVEAYKNKDTSREAVQKHFEETGEDENTQLITMFQHQTAGEFRIMMGTDVRI 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,109
Number of Sequences: 37544
Number of extensions: 118089
Number of successful extensions: 303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)