Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26k04
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 36 0.004
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.74
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 1.3
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 2.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 3.0
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 4.0
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 5.2
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 5.2
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 9.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.1
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.1
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +1
Query: 307 LWINMLGDLDDLAFALSMPRETPEGLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLR 486
LW ++D+ L+ + P +M G + L+K+ + WN Y +
Sbjct: 247 LWQEAFRSIEDIHSLLTFSKRAPAAVMLGNYYRKLIKIFLVCDNYLLHAAAWNRYFTFTN 306
Query: 487 IQKMYVMNYMTSPGSGV-LIPGRKMSLSSYPA 579
+QK N++ + +I K+S S A
Sbjct: 307 VQKPATANFVILSALSIPIIDANKLSGPSIEA 338
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.74
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 437 SERSGSSFTS-PEQCSPNIRPSGVSLGMDS--ANARSSKSPSMLIQSISLTVSHSYMLLV 267
S S SSF+S P S I S S S + SSKS S ++S + S S L
Sbjct: 325 SMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLT 384
Query: 266 ASL*PAARPSS 234
+S ++RP+S
Sbjct: 385 SSSSSSSRPAS 395
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -3
Query: 443 YRSERSGSSFTSPEQCSPNI-----RPSGVSLGMDSANARSSKSPSMLIQSISLTVS 288
++S S ++F+ E+ NI +PS +S+ S + SS SPS+ + S+S ++S
Sbjct: 537 HKSTNSSATFSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQL-SVSSSIS 592
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 449 AVYRSERSGSSFTSPEQCSPNIRPSGVS--LGMDSANARSSKSPSMLIQSIS 300
A Y +ERSG S +S SP+ S S L D A A S +Q I+
Sbjct: 225 ASYDAERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIA 276
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 449 AVYRSERSGSSFTSPEQCSPNIRPSGVSLGMDSANARSSKSPSMLIQSIS 300
+V ++ S +P+Q SPN VSL + + A+ K +LI +S
Sbjct: 20 SVELTDTKSSDNVTPKQKSPNSTEEDVSLNLKTLKAKKFKLAFVLITVLS 69
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 474 VDATDPKDVRDELHDVTGQRGPHTRQEN 557
+D+ P DV D L V GP + Q+N
Sbjct: 1154 IDSIAPPDVNDPLRAVVNSLGPVSEQDN 1181
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -3
Query: 437 SERSGSSFTSPEQCSPNIRPSGVSLGMDSANARSSKSPSMLIQSISLTVSHSYMLLVASL 258
SE S +F P Q S + D +N+ SS S + I +HS +L S
Sbjct: 299 SELSEEAFLLPAQASRKTQKIHYINDNDPSNSYSSYQHSHVHDFIHKNNTHSNRVLSQSS 358
Query: 257 *PAARPS 237
P RPS
Sbjct: 359 GPIVRPS 365
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 427 DLSDLYTAQVTWNSYQSMLRIQKMYVMNY 513
D ++ YT ++ W S ++++++ K+Y Y
Sbjct: 481 DNTERYTFEICWKSAKTIVQLLKIYFKKY 509
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 337 DLAFALSMPRETPEGLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQ 474
DLA L P+ EGLM + S + + + + L + NSY+
Sbjct: 656 DLAQHLLPPKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYE 701
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 338 TWRSRCPCQGRRPRA 382
TW SR CQ RR RA
Sbjct: 909 TWASRAACQQRRGRA 923
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 449 AVYRSERSGSSFTSPEQCSPNIRPSGVSLGMDSANARSSKSPSMLIQ 309
A +S GSS S + SP+ +PS S + + SSK PS Q
Sbjct: 214 AELKSVNEGSSCCSKKDSSPSEKPSCCS--QEKKSCCSSKKPSCCSQ 258
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 504 DELHDVTGQRGPHTRQENVALLLPGLRTVDGRLLRDV--VGAGG 629
+EL + QRG Q +++ T+D +++ + VGAGG
Sbjct: 469 EELDFASVQRGNPEMQRRAQMVIDACTTMDENIIQSIHDVGAGG 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,742
Number of Sequences: 5004
Number of extensions: 48071
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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