Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26k04
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 29 3.1
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 29 3.1
09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859 29 4.1
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 28 5.4
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 28 5.4
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778... 28 7.1
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 28 7.1
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 28 7.1
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 9.4
11_06_0619 + 25574781-25574887,25575280-25575573,25575627-255757... 27 9.4
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 27 9.4
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 27 9.4
03_05_1017 + 29730531-29730738,29730839-29730885,29731415-29731549 27 9.4
03_05_0671 + 26608953-26609671,26609775-26610495 27 9.4
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +1
Query: 88 VLKGYCFNKTDVCALIEDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDA 267
V+KG+ V +ED +DK Y M +E + Y+ + Y I +A
Sbjct: 68 VVKGWIGEVRKVAYRVEDVMDKYSYYSVQMAEEWFLKKYFIKASHYVIVFTEIANEVVKI 127
Query: 268 TKSMYEWLTVRDILWIN 318
K + + + ++D W++
Sbjct: 128 EKEIKQVIELKD-QWLH 143
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 283 RTCS*WHHCSRLLGLPAGCSIALSGTNKDPRSVLAP*MLCNLHFYL 146
RTCS HH ++L+ AG I L N+ M CN+H L
Sbjct: 622 RTCSDCHHAAKLISTIAGREIILKDVNR------IHYMKCNIHMQL 661
>09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859
Length = 279
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 437 SERSGSSFTSPEQCSPNIRPSGVSLGMDSANARSSKS 327
S+ +G S +SP CS +I SG ++ +D N S S
Sbjct: 179 SQHAGGSSSSPLPCSISINSSGRTITLDLTNQAGSGS 215
>03_01_0006 +
65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 193 EDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVRDIL 309
EDP WYQ+ + Y Q + + A Y + E + V ++L
Sbjct: 41 EDPAWYQVLIPY-QYQAILARYQVILDTYKEHIPVEEVL 78
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 434 ERSGSSFTSPEQCSPNIRPSGVSLGMDSANARSSKSP 324
E + +S SPEQ P +RPS G S N SS P
Sbjct: 2 EAAAASSPSPEQ--PLLRPSAARAGSGSGNLSSSPPP 36
>09_04_0688 +
19475847-19477034,19477133-19477384,19477778-19477858,
19477907-19478072,19479009-19479445,19479781-19479837
Length = 726
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 444 HGAGHVEQLPVDATDPKDVRDELHDVTGQRGPHTRQENVALL---LPG 578
+ G + + D TD V D H + Q GPH R+ ++ L LPG
Sbjct: 122 NSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPG 169
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = -3
Query: 428 SGSSFTSPEQCSPNIRPSGVSLGMDSANA-RS-SKSPSML-IQSISLTVSHSYMLLVAS 261
S ++F SP P+ + + +S N RS S SPS++ +QS+ ++SH++ V S
Sbjct: 229 SRNAFDSPNPIRPDSSRAQLQSRSESMNGLRSGSTSPSLVRVQSLGSSISHNFASAVGS 287
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 136 EDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVRD 303
+DY K + ++S QE + P W+ K+ + E +D TK + W+ D
Sbjct: 588 DDYETKAAELVSSW-QEEIKKPSWHPYKIITVDGEDKEVVDDDDTKLRHLWIEYGD 642
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 217 KLYYIQLEGLAAG--YNDATKSMYEWLTVRDILWINMLGDLDD 339
K+ ++ L+G+A +N S+Y W +RD+ +N G ++
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSWEQLRDVFVLNFRGTYEE 285
>11_06_0619 +
25574781-25574887,25575280-25575573,25575627-25575716,
25575776-25576256
Length = 323
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 391 GEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQK----MYVMNYMTSPGSGVLIPGRKM 558
G + S L +LP L +L++ Q W+ Y+S R ++ M + + G+++ G++
Sbjct: 100 GTNVSKLDVVLPMLKELHSGQSEWSLYRSRRRRERADEVMCIGRMLKLTKLGIVVTGKEA 159
Query: 559 S 561
S
Sbjct: 160 S 160
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 413 TSPEQCSPNIRPSGVSLGMDSANARSSKSPSM-LIQSISLTVSHSYMLLVASL*PAARPS 237
+SP P +R S +LG + R S SPS+ L S S + S S S P RPS
Sbjct: 11 SSPPSSPPPLRHSPAALGTPRSRRRHSPSPSLALTPSSSASASAS---ASTSSRPKVRPS 67
>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
Length = 327
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 310 WINMLGDLDDLAFALSMPRETPEGLMFGEHCSGLVKL--LP-DLSDLYT 447
W + D + A MP+ L++GE C+G + L P D+S LYT
Sbjct: 96 WARRVARDDGVGAAAFMPQPCAVDLIYGEVCAGRLALPVTPADVSGLYT 144
>03_05_1017 + 29730531-29730738,29730839-29730885,29731415-29731549
Length = 129
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 127 ALIEDYLDKNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYN-----DATKSMYEWL 291
AL+++YL K+++ +E +D Y + Y+ +EG A N ++ K + EWL
Sbjct: 66 ALLQEYLKKSKENKEKNDKERLDDYYKRNYRDYFGLIEGPARQKNEDELTESEKGILEWL 125
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +1
Query: 100 YC--FNKTDVCALIEDYL--DKNEDYIASMVQEHYE 195
YC +++ D+ A E Y+ D NE+YIA+ +H+E
Sbjct: 331 YCENYDQNDIDAHYEGYINEDYNEEYIAAQDCKHFE 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,889
Number of Sequences: 37544
Number of extensions: 345428
Number of successful extensions: 989
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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