Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26k01
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    32   0.038
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    31   0.067
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    29   0.36 
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    28   0.83 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   0.83 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   1.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.1  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.1  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    27   1.9  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   2.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   5.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   5.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   5.8  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.038
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 1   DFFWILNWIF-PKSIVQ*LFYSTAIL*QNVRFTIRSTCAY 117
           D+ W +NW F P+SI +   +ST+IL  +V   +  TC +
Sbjct: 247 DYKWTVNWRFIPRSIFESTSFSTSILFLHVALLVAFTCKH 286


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 31.5 bits (68), Expect = 0.067
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 203 KEAKLREIEAKEKVIRDA---KLKEEKERASALEIKALEEMASGTAKK*KD 346
           KE KL++  A+E+ IR     +LK EKER    + K L E     AKK K+
Sbjct: 76  KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKE 126


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 185 QNRLSKKEAKL-REIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDK 349
           Q + +K   K  RE  A+E      K KEE+ER +A E  A    A+   K  +DK
Sbjct: 291 QEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDK 346


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 170 YGAFHQNRLSKKEAKLREIE--AKEKVIRDAKLKEEKERASALEIKALE 310
           +G  ++NR +K +AK+R+IE  A     +DAK +E   +    E +A E
Sbjct: 30  FGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAE 78


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 167 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 334
           L  A+++    KK+        KE V+     +  K+ A  LE  + E+M S  AK
Sbjct: 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAK 360


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 185 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEM 316
           Q    KK  K ++   +EK+ R+ +L+EE+E+    E K  E++
Sbjct: 668 QKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKL 711


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 179 FHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEI-KALEE 313
           +H  R S+K+A L + +     + +  ++  K+R  +LE+ KAL++
Sbjct: 446 YHMKRRSRKDAPLLKSQLLMDSLENLPVRASKDRVRSLEVAKALQD 491


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 185 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAK 334
           Q+ L +++  LRE    E+ ++ A+   ++  + ALE++A  + A+  A+
Sbjct: 106 QDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKKAAQDAE 155


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 313
           H N+  KKEAK    +  +   +   L  +K++    E+K+L+E
Sbjct: 299 HLNKFEKKEAKKDRKKKSKDGDQTTLLLRKKQKLGNAEVKSLDE 342


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 185 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 295
           ++  +KKE K R+ EAK++     + KE+KE+    E
Sbjct: 438 EDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 184 PEQAIKERSETTRD*SQREGHPRCQAEGGERKS 282
           PE A +  S+++     R+G     +E GER+S
Sbjct: 127 PESASRSSSQSSHQRHSRDGRGELGSEHGERRS 159


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 53  CFTVQQFYNKMSDLPYGAPVRISP 124
           CF   + Y K  D+P G  +R  P
Sbjct: 183 CFDRSKAYGKRLDIPSGTAIRFEP 206


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 266 EEKERASALEIKALEEMASGTAK 334
           EEK++AS L  + L +  SGT K
Sbjct: 191 EEKQQASGLNFRGLAKPISGTLK 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,123
Number of Sequences: 5004
Number of extensions: 31492
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)