Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j19
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   1.9  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   2.6  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 688  LAAYANSTNSSSFLQNVDYLFP--HGCLSYISWYCVICCNLSTLCFSLKSGEI 536
            L  Y     +   +Q  D++    H CL  + W   I  +L + CFSLK+ EI
Sbjct: 965  LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 628 FPHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQVLR 518
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,044
Number of Sequences: 5004
Number of extensions: 61301
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)