Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j19
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496           29   3.5  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    28   6.1  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    28   8.0  
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436...    28   8.0  

>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
          Length = 589

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 664 NSSSFLQNVDYLFPHGCLSYISWYCVICCNLSTLCFSLKSGEIAGQV 524
           N+ +FL  +      GCL  + W+  + C    LC +L +   + QV
Sbjct: 360 NAVAFLGPLMRAAERGCLQVVEWFVNLGCRDMELCLALTAATSSSQV 406


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 213 YAAFSLHNVSLVNTLELPATPVPICTPFTINTVTSASIK 97
           +A   LH+ S V  L+  AT  P+   F INT    +IK
Sbjct: 189 FAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIK 227


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +3

Query: 234 QNLGITYFIIFKELQQIENTNPHHQNIVRRIYCQLGKCISIGTIPNILQHCIKNHLFCSH 413
           +NL      I + LQQ    NP        +YC +G   S+G  P      + +   C H
Sbjct: 48  RNLDYDLHFILQNLQQELQKNPDSLPFDEILYCNIGNPQSLGQQPVTFFREVLS--LCDH 105

Query: 414 PPL 422
           P L
Sbjct: 106 PAL 108


>03_01_0591 -
           4366400-4366558,4366782-4366985,4367078-4367152,
           4367240-4367394,4367476-4367596,4367720-4367794,
           4369435-4369572,4369655-4369765,4369844-4369948,
           4370327-4370405,4370561-4370622,4370698-4370763,
           4370840-4371024,4371095-4371173
          Length = 537

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 231 EQNLGITYFIIFKELQQIENTNPHHQNIVRRIYCQLGKCISIGTIPNILQHCIKNHLFCS 410
           E N  +T+F  F+ LQQ   T P        +YC +G   S+G  P  +    +    C+
Sbjct: 61  EINRYLTFF--FQHLQQQLQTQPGSLPFDEIVYCNIGNPQSLGQKP--ITFFREVLALCN 116

Query: 411 HPPL 422
           HP L
Sbjct: 117 HPNL 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,407
Number of Sequences: 37544
Number of extensions: 354098
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)