Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j17
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   139   3e-34

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  139 bits (337), Expect = 3e-34
 Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
 Frame = +1

Query: 22  IRKTHPIFKIINNXXXXXXXXXXXXXXXXXXXXXALCLIIQIITGLFLTIYYTANIEIAF 201
           I K++P   + NN                     A  L+IQI+ G+ L  +Y  N+++AF
Sbjct: 3   ILKSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAF 62

Query: 202 YRVNYICRNVNYG*IIRTLHANGASFFFICIYLXIGRGIYYESFNLKYV*L--XXXXXXX 375
             V  I R+VNYG ++R  HANGASFFFI +YL IGRG+YY S+                
Sbjct: 63  LSVERIVRDVNYGFLLRAFHANGASFFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFL 122

Query: 376 XXXXXXXXXYXLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAXDNATLTRFYXX 555
                    Y LP  Q+SFWGATVITNLLSA+P++G  LV+ + GGF+  N TL RF+  
Sbjct: 123 LTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSL 182

Query: 556 XXXXXXXXXXXXXXXXXXXXQTGSNNPL 639
                                 GS+NPL
Sbjct: 183 HYLMPFVIAALSVMHLIALHTNGSSNPL 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,855
Number of Sequences: 5004
Number of extensions: 34816
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)