Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j17
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.6  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 FELFNHSLHFGKYNLLYKKLFQYLLCNI 170
           ++  N++ +   YN  YKKL  Y + NI
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 241 NHSLHFGKYNLLYKKLFQYLLCNI 170
           N++ +   YN  YKKL  Y + NI
Sbjct: 97  NYNNYNNNYNTNYKKLQYYNIINI 120


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 166 TIYYTANIEIAFYRVNYICRNVNY 237
           T++YT N+ +    ++++C  V Y
Sbjct: 233 TLFYTVNLILPTVLISFLCVLVFY 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,528
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)